Browse Element(s) Details


Os.8865.4.S1_x_at

Description gb:NM_190428.1
DB_XREF= gi:34907939
GEN=B1088C09.18
TID=Os.8865.4
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.8865 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) B1088C09.18 (B1088C09.18), mRNA
DEF=Oryza sativa (japonica cultivar-group) B1088C09.18 (B1088C09.18), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6132011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g61270OsAffx.22848.4.S1_at2/111+35773848..35779805retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g61270OsAffx.22848.4.S1_x_at1/111+35773848..35779805retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g61290OsAffx.11684.1.S1_at11/111+35785652..35786286hypothetical protein
LOC_Os01g61300NANA1+35793265..35793663hypothetical protein
LOC_Os01g61310OsAffx.23881.1.S1_x_at11/111+35800544..35801182hypothetical protein
LOC_Os01g61320Os.8865.4.S1_at11/111+35804267..35806360expressed protein
LOC_Os01g61320Os.8865.4.S1_x_at11/111+35804267..35806360expressed protein
LOC_Os01g61320Os.8865.2.S1_x_at11/111+35804267..35806360expressed protein
LOC_Os01g61330Os.37113.1.S1_at11/111+35806920..35809034MSP domain containing protein, expressed
LOC_Os01g61340OsAffx.23882.1.S1_at10/111+35815856..35817124hypothetical protein
LOC_Os01g61350Os.24385.1.S1_at11/111+35818759..35819770Glutaredoxin family protein, expressed
LOC_Os01g61360OsAffx.2378.1.S1_at11/111+35822814..35823216hypothetical protein
LOC_Os01g61370Os.29834.2.S1_at10/111+35823833..35825262expressed protein
LOC_Os01g61380Os.5740.1.S1_at11/111+35825868..35828594Malate dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os01g61390Os.34655.1.S1_at11/111+35828845..35831901transposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8865.4.S1_x_at--91--111Chr01:35804749..35804773 (25 bp)
ATTCGGGCGTCGGAGTACTTTGACA
LOC_Os01g61320
Os.8865.4.S1_x_at--156--3611Chr01:35804862..35804886 (25 bp)
CTTGGAGTGGGAGAGCTTCGCCTTC
LOC_Os01g61320
Os.8865.4.S1_x_at--192--7151Chr01:35804911..35804931 (21 bp)
GTCTTCGAGCGCTACAACAGGGCAG
LOC_Os01g61320
Os.8865.4.S1_x_at--765--3091Chr01:35805265..35805289 (25 bp)
AATAGTAAAGATCGGCTACCTCCTC
LOC_Os01g61320
Os.8865.4.S1_x_at--84--3711Chr01:35805280..35805352 (25 bp)
CTACCTCCTCGGGTTATTGAGGTGG
LOC_Os01g61320
Os.8865.4.S1_x_at--1068--6131Chr01:35805346..35805370 (25 bp)
GAGGTGGTTGGTCATATGCTAAATT
LOC_Os01g61320
Os.8865.4.S1_x_at--924--3111Chr01:35805367..35805391 (25 bp)
AATTTAATTGAGTTCCAGACAGTGA
LOC_Os01g61320
Os.8865.4.S1_x_at--471--6011Chr01:35805411..35805435 (25 bp)
GAGAGACCTGGCATTTGCACTTCAA
LOC_Os01g61320
Os.8865.4.S1_x_at--122--611Chr01:35805444..35805468 (25 bp)
ATGCCCACAATTATTATTCCTCAGG
LOC_Os01g61320
Os.8865.4.S1_x_at--256--1151Chr01:35805674..35805698 (25 bp)
AGAACTAAGAACTGCCGACGAACTA
LOC_Os01g61320
Os.8865.4.S1_x_at--1065--711Chr01:35805705..35805729 (25 bp)
ATGATTGCCCATTTCTACTACAATG
LOC_Os01g61320
Target Sequence 
ATTCGGGCGTCGGAGTACTTTGACAAGCATTCCATCAAGAATGTGACGGTGGATGGTGTGGAGATCGATTGGGAGAGGGA
GGTCGAGGAGGGATGGGTCAAAGAGATCAACTGCTTGGAGTGGGAGAGCTTCGCCTTCCACCCTAGCCCCCTCATCGTTC
TTGTCTTCGAGCGCTACAACAGGGCAGCTGACAATTGGAAGTTTCTTCAAGAATTGGAAAAGGCGGCTAAAGTTTACTGG
AATAGTAAAGATCGGCTACCTCCTCGGGTTATTGAGGTGGTTGGTCATATGCTAAATTTAATTGAGTTCCAGACAGTGAA
GGTTGATATGAATATTGAGAGAGACCTGGCATTTGCACTTCAAGTAAAAGAATGCCCACAATTATTATTCCTCAGGGGAA
ACAAGATATTATACAGGGAAAAAGAACTAAGAACTGCCGACGAACTAGTTCAAATGATTGCCCATTTCTACTACAATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8865.4.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis