Browse Element(s) Details


Os.8870.1.S1_s_at

Description gb:AA751446
DB_XREF= gi:2798152
DB_XREF=96AS0028
CLONE=96AS0028
TID=Os.8870.1
CNT=5
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.8870 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_566003.1 (A.thaliana) expressed protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g123709/11outer envelope protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g12340NANA12+6780564..6788000retrotransposon protein, putative, unclassified
LOC_Os12g12350NANA12+6792728..6793183retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g12360Os.11813.1.S1_at11/1112+6798290..6805850transposon protein, putative, Mutator sub-class, expressed
LOC_Os12g12370Os.8870.1.S1_s_at9/1112+6810024..6814077outer envelope protein, putative, expressed
LOC_Os12g12380Os.50562.3.S1_x_at11/1112+6814189..6819309transposon protein, putative, unclassified, expressed
LOC_Os12g12380Os.50562.1.S1_at10/1112+6814189..6819309transposon protein, putative, unclassified, expressed
LOC_Os12g12380Os.50562.2.S1_at9/1112+6814189..6819309transposon protein, putative, unclassified, expressed
LOC_Os12g12390Os.27497.1.S1_at10/1112+6820124..6821361transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os12g12400Os.47999.3.S1_x_at1/1112+6828160..6830764Zinc knuckle family protein
LOC_Os12g12410NANA12+6835475..6840040retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0009706cellular_componentchloroplast inner membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8870.1.S1_s_at--744--1211Chr12:6812891..6812915 (25 bp)
AGTTATCATTTATTCCAAGCCTCTC
LOC_Os12g12370
Os.8870.1.S1_s_at--133--9511Chr12:6812912..6812936 (25 bp)
TCTCTTTACCATCCAATTCACTATC
LOC_Os12g12370
Os.8870.1.S1_s_at--928--10511NONE
TTCAGACAAGTTAAGCTACCGGTAC
NONE
Os.8870.1.S1_s_at--442--9791NONE
TAAGCTACCGGTACCAGTTTGACAC
NONE
Os.8870.1.S1_s_at--1097--5551Chr12:6813479..6813503 (25 bp)
GAAAGCTGGTTATGAGTCTGACCAA
LOC_Os12g12370
Os.8870.1.S1_s_at--277--1711Chr12:6813499..6813523 (25 bp)
ACCAAAGGCTTGGATGGGCATCTCT
LOC_Os12g12370
Os.8870.1.S1_s_at--368--6751Chr12:6813801..6813825 (25 bp)
GTTCAGTTGACGCTTAAAGTTCCAC
LOC_Os12g12370
Os.8870.1.S1_s_at--520--5211Chr12:6813839..6813863 (25 bp)
GAATTCAGCCATAATGTTCAATGTC
LOC_Os12g12370
Os.8870.1.S1_s_at--350--6111Chr12:6813975..6813999 (25 bp)
GAGTCCATATGTAATCCGTTCAGCT
LOC_Os12g12370
Os.8870.1.S1_s_at--753--6751Chr12:6813992..6814016 (25 bp)
GTTCAGCTCATCTCTCTTGCAGAAT
LOC_Os12g12370
Os.8870.1.S1_s_at--159--8291Chr12:6814022..6814046 (25 bp)
GGCATTTTGGTGTACAATCGATCTA
LOC_Os12g12370
Target Sequence 
AGTTATCATTTATTCCAAGCCTCTCTTTACCATCCAATTCACTATCCTTNGCATTTAAGCGCCNATTCACTCCTTCAGAC
AAGTTAAGCTACCGGTACCAGTTTGACACNAACTACTGGAGTNNTATCTATAAACACNANAGGCCNGTAAGCATGTCAAG
TGGAAAGCTGGTTATGAGTCTGACCAAAGGCTTGGATGGGCATCTCTTTGGGTTGGAGATGCAGGGGGCAAGACGAAGGA
GGTGCCTATGAAGGCTAAAGTTCAGTTGACGCTTAAAGTTCCACAAGACAATGTAAAGAATTCAGCCATAATGTTCAATG
TCAAGAAAAGATGGGATTTCTAGTTTATAAACTGTGTNNTACANCATGTGCACATAACTAAATTTAGTGCACAAATAAAG
GAAGAATAAAGAAAAATATGGATGCATTTGCANGAGTCCATATGTAATCCGTTCAGCTCATCTCTCTTGCAGAATGGAAT
GGCATTTTGGTGTACAATCGATCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8870.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis