Browse Element(s) Details


Os.8873.1.S1_at

Description gb:AB074411.1
DB_XREF= gi:20152202
GEN=OsUBC5a
TID=Os.8873.1
CNT=24
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8873 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) mRNA for ubiquitin-conjugating enzyme OsUBC5a, complete cds.
PROD=ubiquitin-conjugating enzyme OsUBC5a
FL= gb:AK099284.1 gb:AK063826.1 gb:AB074411.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4692611/11Ubiquitin-conjugating enzyme E2-17 kDa 9, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g46900OsAffx.1319.1.S1_at4/111+27090406..27094000transposon protein, putative, Mariner sub-class
LOC_Os01g46910Os.31403.1.S1_at11/111+27094520..27096038expressed protein
LOC_Os01g46920OsAffx.2261.2.S1_at11/111+27099978..27101040hypothetical protein
LOC_Os01g46920OsAffx.2262.1.S1_x_at1/111+27099978..27101040hypothetical protein
LOC_Os01g46926Os.8873.1.S1_at11/111+27107908..27111201Ubiquitin-conjugating enzyme E2-17 kDa 9, putative, expressed
LOC_Os01g46926OsAffx.2262.1.S1_x_at9/111+27107908..27111201Ubiquitin-conjugating enzyme E2-17 kDa 9, putative, expressed
LOC_Os01g46932Os.52748.1.S1_x_at11/111+27112036..27115417Vacuolar protein sorting protein 25, putative, expressed
LOC_Os01g46932Os.52748.1.S1_at11/111+27112036..27115417Vacuolar protein sorting protein 25, putative, expressed
LOC_Os01g46932Os.37449.1.S1_x_at10/111+27112036..27115417Vacuolar protein sorting protein 25, putative, expressed
LOC_Os01g46940OsAffx.21436.1.S1_at11/111+27117124..27118517Sterol desaturase family protein, expressed
LOC_Os01g46950Os.5197.1.S1_a_at11/111+27118631..27122787Possible apospory-associated protein C, putative, expressed
LOC_Os01g46950Os.5197.1.S1_at11/111+27118631..27122787Possible apospory-associated protein C, putative, expressed
LOC_Os01g46950Os.5197.2.S1_x_at9/111+27118631..27122787Possible apospory-associated protein C, putative, expressed
LOC_Os01g46970Os.413.1.S1_at11/111+27126908..27132327bZIP transcription factor family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0004840molecular_functionubiquitin conjugating enzyme activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8873.1.S1_at--352--5831Chr01:27108172..27108196 (25 bp)
GACCTGGACTCAGAGGTACGCCATG
LOC_Os01g46926
Os.8873.1.S1_at--495--6991Chr01:27108157..27108181 (25 bp)
GTACGCCATGTAGCACCTCAGATAT
LOC_Os01g46926
Os.8873.1.S1_at--201--5091Chr01:27108145..27108169 (25 bp)
GCACCTCAGATATCGATGGACATGT
LOC_Os01g46926
Os.8873.1.S1_at--119--851Chr01:27108130..27108154 (25 bp)
ATGGACATGTCGATGTTGTAACAAC
LOC_Os01g46926
Os.8873.1.S1_at--763--131Chr01:27108105..27108129 (25 bp)
ATTATCAACGGGTGTGTCTCCCTCT
LOC_Os01g46926
Os.8873.1.S1_at--448--9311Chr01:27108087..27108111 (25 bp)
TCCCTCTCGCCTTGTGTGGTGTAAG
LOC_Os01g46926
Os.8873.1.S1_at--878--7271Chr01:27108071..27108095 (25 bp)
TGGTGTAAGGATCAAAACCGGCTTT
LOC_Os01g46926
Os.8873.1.S1_at--446--2431Chr01:27108058..27108082 (25 bp)
AAAACCGGCTTTGCAGTGCACTCTT
LOC_Os01g46926
Os.8873.1.S1_at--346--1131Chr01:27108044..27108068 (25 bp)
AGTGCACTCTTGGTGTTGCTCCATT
LOC_Os01g46926
Os.8873.1.S1_at--1083--8611Chr01:27108034..27108058 (25 bp)
TGGTGTTGCTCCATTGTGTCACTCA
LOC_Os01g46926
Os.8873.1.S1_at--378--7451Chr01:27108019..27108043 (25 bp)
GTGTCACTCACTCATTGCAGTGATT
LOC_Os01g46926
Target Sequence 
GACCTGGACTCAGAGGTACGCCATGTAGCACCTCAGATATCGATGGACATGTCGATGTTGTAACAACATTATCAACGGGT
GTGTCTCCCTCTCGCCTTGTGTGGTGTAAGGATCAAAACCGGCTTTGCAGTGCACTCTTGGTGTTGCTCCATTGTGTCAC
TCACTCATTGCAGTGATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8873.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis