Browse Element(s) Details


Os.8874.1.S1_at

Description gb:AK066941.1
DB_XREF= gi:32976959
TID=Os.8874.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8874 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013089J18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013089J18, full insert sequence.
FL= gb:AK061734.1 gb:AK066941.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0808011/11SWIRM domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g08060Os.33601.3.S1_x_at2/1111+4203932..4206883retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g08060OsAffx.20631.1.S1_x_at2/1111+4203932..4206883retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g08060Os.49936.2.A1_at1/1111+4203932..4206883retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g08070OsAffx.30873.1.S1_at11/1111+4208071..4209931hypothetical protein
LOC_Os11g08080Os.8874.1.S1_at11/1111+4216741..4225344SWIRM domain containing protein, expressed
LOC_Os11g08090Os.18349.1.A1_s_at11/1111+4230404..4239219Armadillo/beta-catenin-like repeat family protein, expressed
LOC_Os11g08090OsAffx.18741.1.S1_at11/1111+4230404..4239219Armadillo/beta-catenin-like repeat family protein, expressed
LOC_Os11g08100Os.10861.1.S1_at11/1111+4243212..4247703Eukaryotic aspartyl protease family protein, expressed
LOC_Os11g08110NANA11+4249786..42505863-oxo-5-alpha-steroid 4-dehydrogenase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006338biological_processchromatin remodeling
GO:0016514cellular_componentSWI/SNF complex
GO:0016585cellular_componentchromatin remodeling complex
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8874.1.S1_at--747--10871Chr11:4224784..4224808 (25 bp)
TTGGCCTCGCCTGGAAATAGCCTAC
LOC_Os11g08080
Os.8874.1.S1_at--564--6931Chr11:4224815..4224839 (25 bp)
GTAGTACTAGCACCATGTCATCCAA
LOC_Os11g08080
Os.8874.1.S1_at--352--591Chr11:4224839..4224863 (25 bp)
ATCCAATGAGTATGAGCCCCAGACC
LOC_Os11g08080
Os.8874.1.S1_at--752--911Chr11:4224876..4224900 (25 bp)
AGGCTCGATGCCTCAATCCAGTATG
LOC_Os11g08080
Os.8874.1.S1_at--772--6911Chr11:4224896..4224920 (25 bp)
GTATGCCAGCACCATTTGCCAATAA
LOC_Os11g08080
Os.8874.1.S1_at--554--6231Chr11:4224945..4224969 (25 bp)
GATGGCATTCTTACAACAGCAGCAG
LOC_Os11g08080
Os.8874.1.S1_at--787--3271Chr11:4225043..4225067 (25 bp)
CAAACATCATGTTCAACCCAGGCAT
LOC_Os11g08080
Os.8874.1.S1_at--461--7051Chr11:4225078..4225102 (25 bp)
GTAACCCCTAATCATCATCAACTGT
LOC_Os11g08080
Os.8874.1.S1_at--834--3251Chr11:4225096..4225120 (25 bp)
CAACTGTTGAGGTCGTCTTCTGGAA
LOC_Os11g08080
Os.8874.1.S1_at--100--1731Chr11:4225174..4225198 (25 bp)
ACCAGTGTAGCTTCCTCAGTTGTAG
LOC_Os11g08080
Os.8874.1.S1_at--680--8631Chr11:4225307..4225331 (25 bp)
TGGGTTCTCATTTTATAGCCTCAAA
LOC_Os11g08080
Target Sequence 
TTGGCCTCGCCTGGAAATAGCCTACCTGGGGGTAGTACTAGCACCATGTCATCCAATCCAATGAGTATGAGCCCCAGACC
GATGGGCGTGCCAGGCTCGATGCCTCAATCCAGTATGCCAGCACCATTTGCCAATAACATGCAGGGGCATGGNCACCCCC
AGATGGCATTCTTACAACAGCAGCAGCNNNNNNNNNNNNGGCAGCAGATGCTGTCATTNGGACCTCGNCTGCCGCTGTCG
GCCATCCAAACCCAGCCATCCCCACAGACGTCAAACATCATGTTCAACCCAGGCATGCCCAATTCTGTAACCCCTAATCA
TCATCAACTGTTGAGGTCGTCTTCTGGAAACAATTCAAGTGTAGGATAGGAGAAAGAAAAAAGGGAGATTCATAAGATTC
CAACCAGTGTAGCTTCCTCAGTTGTAGCTTTATATGATTCATAAACATCTCATTGTTATTCATTTGTACAATATGTTCCA
TTGGTCGTATAATTTATGATCACTTAGGTTCTCATTNTATGTATTTATGATCACTTGGGTTCTCATTTTATAGCCTCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8874.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis