Browse Element(s) Details


Os.8884.2.S1_x_at

Description gb:AK072291.1
DB_XREF= gi:32982314
TID=Os.8884.2
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.8884 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023018N16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023018N16, full insert sequence.
FL= gb:AK072291.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3342010/11DNA-binding protein S1FA1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g33370NANA4+20023956..20025929Cytochrome P450 77A2, putative, expressed
LOC_Os04g33380NANA4+20027552..20028265hypothetical protein
LOC_Os04g33450Os.11335.1.S1_at11/114+20033867..20035688expressed protein
LOC_Os04g33440Os.13884.1.S1_at11/114+20037246..20039093DNA-binding protein S1FA2, putative, expressed
LOC_Os04g33430NANA4+20039498..20039863hypothetical protein
LOC_Os04g33420Os.8884.2.S1_x_at10/114+20041598..20043702DNA-binding protein S1FA1, putative, expressed
LOC_Os04g33420Os.8884.1.S1_at9/114+20041598..20043702DNA-binding protein S1FA1, putative, expressed
LOC_Os04g33410OsAffx.30013.3.S1_x_at11/114+20046043..20048220retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g33410OsAffx.30013.3.S1_at11/114+20046043..20048220retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g33410OsAffx.30013.2.S1_at4/114+20046043..20048220retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g33410OsAffx.30013.1.S1_x_at3/114+20046043..20048220retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g33410OsAffx.30013.5.S1_x_at2/114+20046043..20048220retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g33400OsAffx.14112.1.S1_at11/114+20048830..20050740F-box domain containing protein, expressed
LOC_Os04g33460Os.4179.1.S1_at1/114+20052404..200559361,4-alpha-glucan branching enzyme IIB, chloroplast precursor, putative, expressed
LOC_Os04g33470Os.16109.1.S1_at11/114+20057837..20062556calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os04g33480Os.11348.1.S1_at11/114+20065154..20068438histone deacetylase 1A, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8884.2.S1_x_at--622--3371Chr04:20042099..20042123 (25 bp)
CAGCTACCTAAATCGCAATTATATT
LOC_Os04g33420
Os.8884.2.S1_x_at--464--1751Chr04:20042094..20042118 (25 bp)
ACCTAAATCGCAATTATATTTTCAA
LOC_Os04g33420
Os.8884.2.S1_x_at--703--10411Chr04:20042081..20042105 (25 bp)
TTATATTTTCAATCTTTAGGGTGGT
LOC_Os04g33420
Os.8884.2.S1_x_at--152--10371Chr04:20042076..20042100 (25 bp)
TTTTCAATCTTTAGGGTGGTTTCTG
LOC_Os04g33420
Os.8884.2.S1_x_at--1017--9731Chr04:20042073..20042097 (25 bp)
TCAATCTTTAGGGTGGTTTCTGATA
LOC_Os04g33420
Os.8884.2.S1_x_at--811--9551Chr04:20042069..20042093 (25 bp)
TCTTTAGGGTGGTTTCTGATAGTTT
LOC_Os04g33420
Os.8884.2.S1_x_at--125--4391Chr04:20041794..20041818 (25 bp)
CCAATGTTACTGATTTTATCCTGAG
LOC_Os04g33420
Os.8884.2.S1_x_at--991--6771Chr04:20041789..20041813 (25 bp)
GTTACTGATTTTATCCTGAGCTTCT
LOC_Os04g33420
Os.8884.2.S1_x_at--745--3451Chr04:20041724..20041748 (25 bp)
CAGTAACTATGTTATGTAGAAGCTT
LOC_Os04g33420
Os.8884.2.S1_x_at--758--6651Chr04:20041655..20041675 (21 bp)
GTTGAACAGCACTGCAAATTGGAGC
LOC_Os04g33420
Os.8884.2.S1_x_at--535--8971NONE
TGAACAGCACTGCAAATTGGAGCCC
NONE
Target Sequence 
CAGCTACCTAAATCGCAATTATATTTTCAATCTTTAGGGTGGTTTCTGATAGTTTNNNNNNNTNNNNNTCNGAANANNNN
NNNNATNNNGGNNGTNAACANGGGCCNGNAACCCNGGNACNGATAGTCNNTCTTGTGGTTNNCAACTCTCCTGATTCTNT
TCTNTGTNGGAANNTATGCGCTNNACANGTANTGCNTCANGAANNGACNGCTTCCTCCTCGGNAAGAAGAANCCNANTCT
CCNAAGAAGAANCTGAAGAGGGAAAAGCTNGAANCAGGGGNNTTNCTGCACCCGGNAGAGTGAAGAGATTNGTCAGTTTA
CCAATGTTACTGATTTTATCCTGAGCTTCTNTTGCATGATAAGAATTATNAGCNNGGAGCGGCAGTGTTTNCAGTAACTA
TGTTATGTAGAAGCTTTGTCNTAAGTGGTTTACATTTGTATTAGACGCCTTATTTGAGCAATNTGTTGAACAGCACTGCA
AATTGGAGCCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8884.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis