Browse Element(s) Details


Os.8901.1.S1_at

Description gb:BU673546
DB_XREF= gi:23514259
DB_XREF=NL_16_89
CLONE=NL_16_89
TID=Os.8901.1
CNT=27
FEA=FLmRNA
TIER=Stack
STK=6
UG=Os.8901 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-212-C07, full insert sequence
FL= gb:AK073631.1 gb:AK104165.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2213011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g22090Os.22916.1.A1_at11/112+13144842..13149932Pattern formation protein EMB30, putative, expressed
LOC_Os02g22100Os.11736.1.S1_at10/112+13156591..13164106Rhomboid family protein, expressed
LOC_Os02g22100Os.51832.1.S1_at1/112+13156591..13164106Rhomboid family protein, expressed
LOC_Os02g22110OsAffx.12154.1.S1_at9/112+13164480..13164761hypothetical protein
LOC_Os02g22120OsAffx.12155.2.A1_at11/112+13169859..13171845hypothetical protein
LOC_Os02g22130Os.8901.1.S1_at11/112+13173638..13176600expressed protein
LOC_Os02g22130Os.8901.1.S2_at11/112+13173638..13176600expressed protein
LOC_Os02g22140Os.11794.1.S1_at11/112+13179015..13184649ADP-ribosylation factor At2g18390, putative, expressed
LOC_Os02g22150NANA2+13185548..13186233hypothetical protein
LOC_Os02g22160Os.8802.1.S1_at11/112+13200804..13203747expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8901.1.S1_at--132--7631Chr02:13173712..13173736 (25 bp)
GGGAAACAGCTGACGCGCTCCGCTC
LOC_Os02g22130
Os.8901.1.S1_at--888--6671Chr02:13173774..13173798 (25 bp)
GTTGCTGACTTGACCAGAGACGAGC
LOC_Os02g22130
Os.8901.1.S1_at--558--371Chr02:13173873..13173897 (25 bp)
ATCAAGCATATCCATCTCCGATTCA
LOC_Os02g22130
Os.8901.1.S1_at--694--3551Chr02:13173885..13173909 (25 bp)
CATCTCCGATTCACAGATTCTTTCT
LOC_Os02g22130
Os.8901.1.S1_at--504--6571Chr02:13173900..13173924 (25 bp)
GATTCTTTCTGGAGATCCATCATCC
LOC_Os02g22130
Os.8901.1.S1_at--881--6031Chr02:13173911..13173935 (25 bp)
GAGATCCATCATCCAGCGAGAGCGA
LOC_Os02g22130
Os.8901.1.S1_at--221--7131Chr02:13174064..13174087 (24 bp)
GTCATCGTCCGCATGGGCAAGCAGA
LOC_Os02g22130
Os.8901.1.S1_at--457--2391Chr02:13174419..13174443 (25 bp)
AAGACTACCAATCCGGAGTGGAACG
LOC_Os02g22130
Os.8901.1.S1_at--945--6111Chr02:13174434..13174458 (25 bp)
GAGTGGAACGATGAACTCACCCTCT
LOC_Os02g22130
Os.8901.1.S1_at--1150--8971Chr02:13174445..13174469 (25 bp)
TGAACTCACCCTCTCGATTGAAGAT
LOC_Os02g22130
Os.8901.1.S1_at--440--4191Chr02:13174453..13174477 (25 bp)
CCCTCTCGATTGAAGATCCAGCAGT
LOC_Os02g22130
Target Sequence 
GGGAAACAGCTGACGCGCTCCGCTCCGTTCCGCTGCCGCCGTTGGCCGGCCGGGCGGTCGCTGTTGCTGACTTGACCAGA
GACGAGCAGCAAGGGGGCAGTTGGATTGGATTAGAGGGTGCTTTTATATAGAGGAGCACGAGGAGGAGGAGGAGGAGGAG
GGCCATCAAGCATATCCATCTCCGATTCACAGATTCTTTCTGGAGATCCATCATCCAGCGAGAGCGAGAGCGAGAGGGAG
AGGNAGAGGGAAAGCCGCCACCGCCATGTTGGGGCATCTGGTTGGGCTGGTGAAGGTGCGGGTGGTGAGGGGCGTCAACC
TCGCCGTCCGCGACCTCCGCTCCAGCGACCCCTACGTCATCGTCCGCATGGGCAAGCAGAAGTTGAAGACACGAGTCATA
AAAAAGACTACCAATCCGGAGTGGAACGATGAACTCACCCTCTCGATTGAAGATCCAGCAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8901.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis