Browse Element(s) Details


Os.8902.1.S1_at

Description gb:AK103832.1
DB_XREF= gi:32989041
TID=Os.8902.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8902 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033148A21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033148A21, full insert sequence.
FL= gb:AK103832.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2822011/11Transferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g28170Os.9456.1.S1_at11/112+16672418..16674160Transferase family protein, expressed
LOC_Os02g28180OsAffx.13052.2.S1_at11/112+16674535..16677212transposon protein, putative, unclassified
LOC_Os02g28190NANA2+16684504..16684719hypothetical protein
LOC_Os02g28200OsAffx.12252.3.S1_x_at11/112+16686137..16687654Transferase family protein
LOC_Os02g28210OsAffx.24473.1.S1_at11/112+16693441..16693728hypothetical protein
LOC_Os02g28220Os.8902.1.S1_at11/112+16696291..16698079Transferase family protein, expressed
LOC_Os02g28230NANA2+16701068..16701373hypothetical protein
LOC_Os02g28240OsAffx.12252.1.S1_at11/112+16701967..16703216Transferase family protein
LOC_Os02g28240OsAffx.12252.3.S1_x_at2/112+16701967..16703216Transferase family protein
LOC_Os02g28250Os.26886.6.S1_s_at9/112+16704090..16707184transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g28250Os.26886.2.S1_s_at8/112+16704090..16707184transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g28250OsAffx.3425.1.S1_at1/112+16704090..16707184transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g28250OsAffx.5348.1.S1_at1/112+16704090..16707184transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g28260Os.26886.3.S1_x_at4/112+16708471..16709810transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g28270NANA2+16712881..16713213hypothetical protein
LOC_Os02g28280OsAffx.12250.2.S1_at11/112+16715345..16717026hypothetical protein
LOC_Os02g28280OsAffx.12250.1.S1_at5/112+16715345..16717026hypothetical protein
LOC_Os02g28290OsAffx.2774.1.S1_at11/112+16717763..16718276hypothetical protein
LOC_Os02g28300NANA2+16720505..16722125Transferase family protein

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Gene Ontology Classification
GO idTypeName
GO:0016740molecular_functiontransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8902.1.S1_at--585--7451Chr02:16697791..16697815 (25 bp)
GTGTCGCTTGGCTTTCGTGGGCTTC
LOC_Os02g28220
Os.8902.1.S1_at--177--10611Chr02:16697804..16697828 (25 bp)
TTCGTGGGCTTCGATGGGCTGCTTC
LOC_Os02g28220
Os.8902.1.S1_at--598--9071Chr02:16697823..16697847 (25 bp)
TGCTTCCGTCAGCTATCACGTGCGT
LOC_Os02g28220
Os.8902.1.S1_at--563--10171Chr02:16697836..16697860 (25 bp)
TATCACGTGCGTGCCCTATGTGAGC
LOC_Os02g28220
Os.8902.1.S1_at--471--3991Chr02:16697845..16697869 (25 bp)
CGTGCCCTATGTGAGCCGTCGGATG
LOC_Os02g28220
Os.8902.1.S1_at--481--7191Chr02:16697862..16697886 (25 bp)
GTCGGATGGCTTGGACGATTGATAA
LOC_Os02g28220
Os.8902.1.S1_at--132--5311Chr02:16697892..16697916 (25 bp)
GAAGGCACGCTATATGCACATGCAC
LOC_Os02g28220
Os.8902.1.S1_at--292--5231Chr02:16697948..16697972 (25 bp)
GAATACCGTAGTATTGTATCGACGT
LOC_Os02g28220
Os.8902.1.S1_at--210--51Chr02:16697960..16697984 (25 bp)
ATTGTATCGACGTATCCGTATCCCA
LOC_Os02g28220
Os.8902.1.S1_at--604--5751Chr02:16697968..16697992 (25 bp)
GACGTATCCGTATCCCAATATCCAT
LOC_Os02g28220
Os.8902.1.S1_at--973--8551Chr02:16698011..16698035 (25 bp)
TGGATTTTTCTCATCGTCGCAGATA
LOC_Os02g28220
Target Sequence 
GTGTCGCTTGGCTTTCGTGGGCTTCGATGGGCTGCTTCCGTCAGCTATCACGTGCGTGCCCTATGTGAGCCGTCGGATGG
CTTGGACGATTGATAAGTGCTGAAGGCACGCTATATGCACATGCACCCCGGACGCTTTGCTCTTTTTTTTTTTAAGAGAA
TACCGTAGTATTGTATCGACGTATCCGTATCCCAATATCCATCCCTATTTAAAACATATATGGATTTTTCTCATCGTCGC
AGATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8902.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis