Browse Element(s) Details


Os.8911.1.S1_at

Description gb:AK073999.1
DB_XREF= gi:32984022
TID=Os.8911.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8911 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033073C08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033073C08, full insert sequence.
FL= gb:AK073999.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0497011/11Chaperonin CPN60-1, mitochondrial precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g04930Os.9536.1.S1_at11/113+2354327..2357146pre-mRNA processing protein PRP39, putative, expressed
LOC_Os03g04940Os.49308.1.A1_at11/113+2359148..2363763expressed protein
LOC_Os03g04950OsAffx.12734.1.S1_at11/113+2366931..2369282subtilase family protein, putative
LOC_Os03g04960Os.17914.1.S1_at10/113+2375853..2379694Cysteinyl-tRNA synthetase, putative, expressed
LOC_Os03g04970Os.8911.1.S1_at11/113+2380125..2385850Chaperonin CPN60-1, mitochondrial precursor, putative, expressed
LOC_Os03g04970Os.54271.1.S1_at1/113+2380125..2385850Chaperonin CPN60-1, mitochondrial precursor, putative, expressed
LOC_Os03g04980Os.9928.1.S1_at11/113+2388972..2392542PHD-finger family protein, expressed
LOC_Os03g04980Os.9932.2.S1_x_at2/113+2388972..2392542PHD-finger family protein, expressed
LOC_Os03g04980Os.9932.1.S1_x_at1/113+2388972..2392542PHD-finger family protein, expressed
LOC_Os03g04990Os.18674.1.S1_at11/113+2394731..2398679expressed protein
LOC_Os03g05000Os.28943.1.S1_x_at1/113+2401005..2404238retrotransposon protein, putative, unclassified
LOC_Os03g05010NANA3+2405073..2407904retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006954biological_processinflammatory response
GO:0007005biological_processmitochondrion organization and biogenesis
GO:0009408biological_processresponse to heat
GO:0051131biological_processchaperone-mediated protein complex assembly
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8911.1.S1_at--664--1431Chr03:2380931..2380955 (25 bp)
AGAACAGCTCTGGTGGATGCTGCAA
LOC_Os03g04970
Os.8911.1.S1_at--160--631Chr03:2380608..2380939 (25 bp)
ATGCTGCAAGTGTGTCCTCTCTAAT
LOC_Os03g04970
Os.8911.1.S1_at--534--10471Chr03:2380485..2380509 (25 bp)
TTACTCTCCGGCTCATGCAAAGTTA
LOC_Os03g04970
Os.8911.1.S1_at--772--6551Chr03:2380437..2380461 (25 bp)
GATTAGATTATTTTTGCGGTGCGGA
LOC_Os03g04970
Os.8911.1.S1_at--13--9131Chr03:2380423..2380447 (25 bp)
TGCGGTGCGGACATCTTTAACTGAT
LOC_Os03g04970
Os.8911.1.S1_at--271--211Chr03:2380276..2380300 (25 bp)
ATTTGCTCTGGGTTTGCCTATTTTC
LOC_Os03g04970
Os.8911.1.S1_at--66--4311Chr03:2380260..2380284 (25 bp)
CCTATTTTCGCTTTTGCTCGAGCAA
LOC_Os03g04970
Os.8911.1.S1_at--757--9831Chr03:2380213..2380237 (25 bp)
TAAATGTGCGAGTTCCCTGTGACTG
LOC_Os03g04970
Os.8911.1.S1_at--181--4191Chr03:2380199..2380223 (25 bp)
CCCTGTGACTGGTCCGTTTAGAATT
LOC_Os03g04970
Os.8911.1.S1_at--164--3071Chr03:2380169..2380193 (25 bp)
AATCTTAACTTTCAGCCACTTCTAA
LOC_Os03g04970
Os.8911.1.S1_at--611--4851Chr03:2380126..2380150 (25 bp)
GCTACTGTGGCAATTTTTCCGGATT
LOC_Os03g04970
Target Sequence 
AGAACAGCTCTGGTGGATGCTGCAAGTGTGTCCTCTCTAATGACTNCCNCAGAATCTATTATTGTTGNGANCCCCAAGGA
AGAGGAGGCAGCAGCCGCAGCACCCGCAATGGGTGGCATGGNCGGGATGGGTNTCTAGCTTACTCTCCGGCTCATGCAAA
GTTATTGTGTGATAAATTTATTCACTAGATTAGATTATTTTTGCGGTGCGGACATCTTTAACTGATGAGGTGGCTGTCAG
ATTTTGATTCTGCTGCAAGAGNATTGTAACTTGAAGTAGTAGAATTGAACTTTGGAATTTGGGATGCATAAAATCCTTCT
ATATAGGTGGTGCAAGTTGGATTTTGTGATTTGCTCTGGGTTTGCCTATTTTCGCTTTTGCTCGAGCAATCCAAGAACAG
TACTACTTCGATAAATGTGCGAGTTCCCTGTGACTGGTCCGTTTAGAATTAGTTTAATCTTAACTTTCAGCCACTTCTAA
CTCAAAGCAAAGAATGAAGCTACTGTGGCAATTTTTCCGGATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8911.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis