Browse Element(s) Details


Os.8936.1.S1_at

Description gb:AK106559.1
DB_XREF= gi:32991768
TID=Os.8936.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8936 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-110-B06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-110-B06, full insert sequence.
FL= gb:AK106559.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0739010/11Mla1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g07360Os.26886.3.S1_x_at6/118+4112233..4117415transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g07360Os.26886.1.S1_x_at5/118+4112233..4117415transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g07370OsAffx.16873.1.S1_at11/118+4120724..4122411RGH1A, putative
LOC_Os08g07380Os.49373.1.S1_at1/118+4126151..4137217retrotransposon protein, putative, unclassified, expressed
LOC_Os08g07390OsAffx.16875.1.S1_x_at11/118+4140704..4143654Mla1, putative, expressed
LOC_Os08g07390Os.8936.1.S1_at10/118+4140704..4143654Mla1, putative, expressed
LOC_Os08g07400Os.22305.1.S1_at11/118+4147023..4150907Cullin family protein, expressed
LOC_Os08g07410NANA8+4153484..4156789retrotransposon protein, putative, unclassified
LOC_Os08g07420NANA8+4157400..4163555retrotransposon protein, putative, unclassified
LOC_Os08g07430Os.53189.1.S1_at11/118+4165918..4169212expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8936.1.S1_at--1145--9531Chr08:4141280..4141304 (25 bp)
TCACATACTTGGCAACTTCGGAGTA
LOC_Os08g07390
Os.8936.1.S1_at--370--6891Chr08:4141258..4141282 (25 bp)
GTATATGCCTGTGAAACTCTAGACA
LOC_Os08g07390
Os.8936.1.S1_at--226--7931Chr08:4141185..4141209 (25 bp)
GGATTCTATACCACTAGTTTCTGAT
LOC_Os08g07390
Os.8936.1.S1_at--924--751Chr08:4141129..4141153 (25 bp)
ATGTCAACCTTCCAGACGTGTGTGT
LOC_Os08g07390
Os.8936.1.S1_at--652--1911Chr08:4141114..4141138 (25 bp)
ACGTGTGTGTGCTCATGCTGTTTAC
LOC_Os08g07390
Os.8936.1.S1_at--1090--4711Chr08:4141098..4141122 (25 bp)
GCTGTTTACTTTGCAGATCGTTTAA
LOC_Os08g07390
Os.8936.1.S1_at--801--2291Chr08:4140889..4140913 (25 bp)
AAATGTCTCCTGCATCTTATTAGAA
LOC_Os08g07390
Os.8936.1.S1_at--42--6711Chr08:4140793..4140817 (25 bp)
GTTCGTAATATAGATCGCCCCACTG
LOC_Os08g07390
Os.8936.1.S1_at--682--4531Chr08:4140777..4140801 (25 bp)
GCCCCACTGGAGCTGGAACATCTTA
LOC_Os08g07390
Os.8936.1.S1_at--15--5491Chr08:4140762..4140786 (25 bp)
GAACATCTTAGGCTCCTAGCTGCAT
LOC_Os08g07390
Os.8936.1.S1_at--843--331NONE
ATAAATTGGCGGATGCTTTGCAGTT
NONE
Target Sequence 
TCACATACTTGGCAACTTCGGAGTATATGCCTGTGAAACTCTAGACAGAATGTATTGGATATCGTTCACTCCAAAAATAC
AAGTTTACAACACAAGGATTCTATACCACTAGTTTCTGATGGAAATGGCAGCAAGCATGAATGAGCTGAACATGTCAACC
TTCCAGACGTGTGTGTGCTCATGCTGTTTACTTTGCAGATCGTTTAACACATCGTGATATTGAACAGACAACAAAAATAT
CACCTGTATATTGAAATGAAGTGAGGAAATCTCTGATGATGTCAATGATAATTTGCTAGAAAGTTGTTCAAGGTCAGTAT
GTAAGGACCACATTTTTTTTTCTGGTTGTGGATAGTTGAATATCATAGAATTATTTCTGAGGTAACGCATAAAATGTCTC
CTGCATCTTATTAGAACGTATTGGATTAGAAAGGGGATTGTGTGCAGTGGAAGGAATTTGGAGTTGCGTAGTGGCAAATA
TACAATTGTTCGTAATATAGATCGCCCCACTGGAGCTGGAACATCTTAGGCTCCTAGCTGCATGGCTTGTATGATAAATT
GGCGGATGCTTTGCAGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8936.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis