Browse Element(s) Details


Os.8978.1.S1_a_at

Description gb:AK067216.1
DB_XREF= gi:32977234
TID=Os.8978.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.8978 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0677H08.13 (P0677H08.13), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013098P16, full insert sequence.
FL= gb:AK067216.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6481011/11DHHC zinc finger domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g64790NANA1+37916627..37919295AP2 domain containing protein, expressed
LOC_Os01g64800NANA1+37921920..37922189hypothetical protein
LOC_Os01g64810Os.8978.1.S1_a_at11/111+37942805..37948944DHHC zinc finger domain containing protein, expressed
LOC_Os01g64810Os.8978.3.S1_x_at11/111+37942805..37948944DHHC zinc finger domain containing protein, expressed
LOC_Os01g64810Os.8978.2.S1_at11/111+37942805..37948944DHHC zinc finger domain containing protein, expressed
LOC_Os01g64820OsAffx.9523.1.S1_x_at11/111+37952644..37961025DNA polymerase alpha catalytic subunit, putative, expressed
LOC_Os01g64820Os.47313.1.A1_at10/111+37952644..37961025DNA polymerase alpha catalytic subunit, putative, expressed
LOC_Os01g64830OsAffx.11734.2.S1_x_at11/111+37964061..37966714Eukaryotic aspartyl protease family protein
LOC_Os01g64830OsAffx.11734.2.S1_at11/111+37964061..37966714Eukaryotic aspartyl protease family protein
LOC_Os01g64830OsAffx.11734.3.S1_at10/111+37964061..37966714Eukaryotic aspartyl protease family protein
LOC_Os01g64830OsAffx.11734.1.S1_at1/111+37964061..37966714Eukaryotic aspartyl protease family protein
LOC_Os01g64840OsAffx.11734.1.S1_at11/111+37968421..37969887Eukaryotic aspartyl protease family protein, expressed
LOC_Os01g64840OsAffx.11734.2.S1_x_at1/111+37968421..37969887Eukaryotic aspartyl protease family protein, expressed
LOC_Os01g64850OsAffx.9521.1.S1_at11/111+37973868..37976141Subtilisin N-terminal Region family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8978.1.S1_a_at--243--5231Chr01:37943972..37943996 (25 bp)
GAATAGATGCCAGTGGCATGGATCA
LOC_Os01g64810
Os.8978.1.S1_a_at--55--5011Chr01:37943957..37943981 (25 bp)
GCATGGATCATTAAGCTGATGAACT
LOC_Os01g64810
Os.8978.1.S1_a_at--219--5471Chr01:37943937..37943961 (25 bp)
GAACTGATTCATTCAAGTCACATCT
LOC_Os01g64810
Os.8978.1.S1_a_at--516--10551Chr01:37943930..37943954 (25 bp)
TTCATTCAAGTCACATCTGCACAGA
LOC_Os01g64810
Os.8978.1.S1_a_at--91--1171Chr01:37943922..37943946 (25 bp)
AGTCACATCTGCACAGACAGGAACA
LOC_Os01g64810
Os.8978.1.S1_a_at--1132--5651Chr01:37943907..37943931 (25 bp)
GACAGGAACAAATGCCCTTCATGAA
LOC_Os01g64810
Os.8978.1.S1_a_at--808--4531Chr01:37943894..37943918 (25 bp)
GCCCTTCATGAACTTCAACGGCATT
LOC_Os01g64810
Os.8978.1.S1_a_at--1123--5471Chr01:37943885..37943909 (25 bp)
GAACTTCAACGGCATTCATCAGTGC
LOC_Os01g64810
Os.8978.1.S1_a_at--778--2571Chr01:37943878..37943902 (25 bp)
AACGGCATTCATCAGTGCTTTCCAC
LOC_Os01g64810
Os.8978.1.S1_a_at--961--111Chr01:37943872..37943896 (25 bp)
ATTCATCAGTGCTTTCCACCATTTT
LOC_Os01g64810
Os.8978.1.S1_a_at--334--9631Chr01:37943867..37943891 (25 bp)
TCAGTGCTTTCCACCATTTTTCATG
LOC_Os01g64810
Target Sequence 
GAATAGATGCCAGTGGCATGGATCATTAAGCTGATGAACTGATTCATTCAAGTCACATCTGCACAGACAGGAACAAATGC
CCTTCATGAACTTCAACGGCATTCATCAGTGCTTTCCACCATTTTTCATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8978.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis