Browse Element(s) Details


Os.8987.1.S1_at

Description gb:AK121328.1
DB_XREF= gi:37990951
TID=Os.8987.1
CNT=15
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.8987 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023117N12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023117N12, full insert sequence.
FL= gb:AK121328.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g104004/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g10360NANA8+6065206..6072519retrotransposon protein, putative, unclassified
LOC_Os08g10370OsAffx.31869.1.S1_at7/118+6072815..6073918retrotransposon protein, putative, unclassified
LOC_Os08g10370OsAffx.31869.3.S1_x_at4/118+6072815..6073918retrotransposon protein, putative, unclassified
LOC_Os08g10370OsAffx.31869.5.S1_x_at4/118+6072815..6073918retrotransposon protein, putative, unclassified
LOC_Os08g10370OsAffx.31869.3.S1_at3/118+6072815..6073918retrotransposon protein, putative, unclassified
LOC_Os08g10370OsAffx.31869.3.S1_s_at3/118+6072815..6073918retrotransposon protein, putative, unclassified
LOC_Os08g10380OsAffx.16934.1.S1_at11/118+6079093..6079839hypothetical protein
LOC_Os08g10390OsAffx.8965.1.S1_at1/118+6092034..6094474hypothetical protein
LOC_Os08g10400Os.8987.1.S1_at4/118+6096652..6099054expressed protein
LOC_Os08g10400Os.10468.1.S1_at2/118+6096652..6099054expressed protein
LOC_Os08g10410Os.6198.1.S1_at11/118+6106033..6109271expressed protein
LOC_Os08g10420OsAffx.5777.1.S1_at11/118+6115476..6117299Transferase family protein, expressed
LOC_Os08g10430Os.49897.1.S1_at11/118+6121076..6125048NB-ARC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8987.1.S1_at--400--1271NONE
AGATCACTTCCTCAAGACTTCGGAT
NONE
Os.8987.1.S1_at--677--1412Chr08:6097175..6097199 (25 bp)
AGACACAATCTCAAGGTTCTGCCTC
LOC_Os08g10400
Os.8987.1.S1_at--39--6731Chr03:29399320..29399344 (25 bp)
GTTCTGCCTCTTCTGTTCCAAAGAA
NONE
Os.8987.1.S1_at--357--8812Chr08:6097150..6097174 (25 bp)
TGTTCCAAAGAACCCAGCCATGTCC
LOC_Os08g10400
Os.8987.1.S1_at--465--1692Chr08:6097135..6097159 (25 bp)
AGCCATGTCCTCTTGTCGGAAGAAG
LOC_Os08g10400
Os.8987.1.S1_at--1152--1451Chr03:29399269..29399293 (25 bp)
AGAAGTCTGACGACGCTACGTTCCT
NONE
Os.8987.1.S1_at--865--1851Chr03:29399260..29399284 (25 bp)
ACGACGCTACGTTCCTCGAAGATCT
NONE
Os.8987.1.S1_at--254--4952Chr08:6097030..6097054 (25 bp)
GCATTGCTTCAAAAACACCATCCAG
LOC_Os08g10400
Os.8987.1.S1_at--119--2231Chr03:29398761..29398785 (25 bp)
ACAAGTGTCGAATTGCTGATCTGTT
NONE
Os.8987.1.S1_at--864--9111Chr03:29398748..29398772 (25 bp)
TGCTGATCTGTTTTGCTCATGTAGC
NONE
Os.8987.1.S1_at--881--6951Chr03:29398728..29398752 (25 bp)
GTAGCAGATTCCTAGTCTATCCTAA
NONE
Target Sequence 
AGATCACTTCCTCAAGACTTCGGATGGAATCCATTAAGACACAATCTCAAGGTTCTGCCTCTTCTGTTCCAAAGAACCCA
GCCATGTCCTCTTGTCGGAAGAAGAAGTCTGACGACGCTACGTTCCTCGAAGATCTGAAAGACCATATCGACGAGTTCAT
CCATGCCTCCATGGATGAGCACAAGCATTGCTTCAAAAACACCATCCAGAAGATGTTTGGGATGTCAAAGGTTGTCGCAG
AGCGTTCCGCTGAAGCAAAAGAAGCTGAAGTCGAGAGCGCTTTGCCTCTTCAGACCAGTGTCTCGCAGTAGGATGCCATG
GCTGATGGCAGCTTGTTTGCCTTCTGTTGCCTGTGTTCCGTCCTGTGGAGCTTAACAATCAGTAATACCTGTAATAGCAG
TGAATATGGAGTCTACTGCTTTATGTTTCCTTGTATTTTGCTGTTTTTTTCATATATTTTGAGAACAAATCTTGAACAAA
ATGGGGTATAACTAAAAAGTCTACTTCAACAAGTGTCGAATTGCTGATCTGTTTTGCTCATGTAGCAGATTCCTAGTCTA
TCCTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8987.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis