Browse Element(s) Details


Os.9009.1.S1_at

Description gb:AK101309.1
DB_XREF= gi:32986518
TID=Os.9009.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9009 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNBa0060A14.19), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033033N23, full insert sequence.
FL= gb:AK101309.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2670011/11YGL010w, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g26650OsAffx.29757.1.S1_x_at11/1110+13581976..13588185Transposable element protein, putative, MuDR
LOC_Os10g26650OsAffx.29757.3.S1_x_at7/1110+13581976..13588185Transposable element protein, putative, MuDR
LOC_Os10g26650OsAffx.29757.4.S1_x_at5/1110+13581976..13588185Transposable element protein, putative, MuDR
LOC_Os10g26650OsAffx.29757.3.S1_at3/1110+13581976..13588185Transposable element protein, putative, MuDR
LOC_Os10g26660Os.20158.1.S1_s_at11/1110+13588501..13594205expressed protein
LOC_Os10g26670OsAffx.30548.1.S1_at11/1110+13596953..13598170expressed protein
LOC_Os10g26680Os.11818.1.S1_at11/1110+13601475..13603859Pectinesterase family protein, expressed
LOC_Os10g26680Os.39588.1.A1_x_at2/1110+13601475..13603859Pectinesterase family protein, expressed
LOC_Os10g26690Os.46494.1.S1_at11/1110+13606147..13608140ribosomal protein L32 containing protein, expressed
LOC_Os10g26700Os.9009.1.S1_x_at11/1110+13608611..13609669YGL010w, putative, expressed
LOC_Os10g26700Os.9009.1.S1_at11/1110+13608611..13609669YGL010w, putative, expressed
LOC_Os10g26710OsAffx.6776.1.S1_at11/1110+13610669..13611054hypothetical protein
LOC_Os10g26720Os.51603.1.S1_at1/1110+13614800..13620101exonuclease family protein, expressed
LOC_Os10g26730Os.11312.1.S1_s_at11/1110+13623053..13626656exonuclease family protein, putative, expressed
LOC_Os10g26730Os.11312.1.S1_at11/1110+13623053..13626656exonuclease family protein, putative, expressed
LOC_Os10g26740OsAffx.6777.1.S1_at10/1110+13633970..13635010hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9009.1.S1_at--929--4011Chr10:13609006..13609030 (25 bp)
CGTCTTCATCGAGGTAATTGGCCGT
LOC_Os10g26700
Os.9009.1.S1_at--115--10531Chr10:13609002..13609026 (25 bp)
TTCATCGAGGTAATTGGCCGTGTTC
LOC_Os10g26700
Os.9009.1.S1_at--435--1031Chr10:13608995..13609019 (25 bp)
AGGTAATTGGCCGTGTTCGTTCGAG
LOC_Os10g26700
Os.9009.1.S1_at--320--9231Chr10:13608992..13609016 (25 bp)
TAATTGGCCGTGTTCGTTCGAGTTG
LOC_Os10g26700
Os.9009.1.S1_at--753--10851Chr10:13608989..13609013 (25 bp)
TTGGCCGTGTTCGTTCGAGTTGGTC
LOC_Os10g26700
Os.9009.1.S1_at--955--8791Chr10:13608982..13609006 (25 bp)
TGTTCGTTCGAGTTGGTCGCCGTGC
LOC_Os10g26700
Os.9009.1.S1_at--480--4371Chr10:13608944..13608968 (25 bp)
GCCAAGTGTTCGATTTAATGCGAGT
LOC_Os10g26700
Os.9009.1.S1_at--182--191Chr10:13608932..13608956 (25 bp)
ATTTAATGCGAGTGCGGTTGCTCCG
LOC_Os10g26700
Os.9009.1.S1_at--65--3031Chr10:13608928..13608952 (25 bp)
AATGCGAGTGCGGTTGCTCCGTGTT
LOC_Os10g26700
Os.9009.1.S1_at--636--1131Chr10:13608922..13608946 (25 bp)
AGTGCGGTTGCTCCGTGTTTTTGCA
LOC_Os10g26700
Os.9009.1.S1_at--1130--4231Chr10:13608910..13608934 (25 bp)
CCGTGTTTTTGCAGGTGCTGCATAG
LOC_Os10g26700
Target Sequence 
CGTCTTCATCGAGGTAATTGGCCGTGTTCGTTCGAGTTGGTCGCCGTGCGGCGATGGCGACCGCCAAGTGTTCGATTTAA
TGCGAGTGCGGTTGCTCCGTGTTTTTGCAGGTGCTGCATAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9009.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis