Browse Element(s) Details


Os.9021.1.S1_at

Description gb:AK120928.1
DB_XREF= gi:37990551
TID=Os.9021.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9021 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033067L13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023035P13, full insert sequence.
FL= gb:AK120928.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2243010/11ATP-dependent Clp protease proteolytic subunit, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g22410NANA3+12813146..12813862eukaryotic translation initiation factor 2B family protein, putative, expressed
LOC_Os03g22420NANA3+12815590..12826275AAA-type ATPase family protein, putative, expressed
LOC_Os03g22430Os.9021.1.S1_at10/113+12833027..12838187ATP-dependent Clp protease proteolytic subunit, putative, expressed
LOC_Os03g22430OsAffx.23838.2.S1_at1/113+12833027..12838187ATP-dependent Clp protease proteolytic subunit, putative, expressed
LOC_Os03g22440NANA3+12841445..12841855Rapid ALkalinization Factor family protein
LOC_Os03g22450Os.52202.1.S1_at4/113+12844276..12848021Rad9 family protein, expressed
LOC_Os03g22460Os.12774.1.S1_at11/113+12848250..1285003440S ribosomal protein S21, putative, expressed
LOC_Os03g22460Os.57468.1.S1_x_at5/113+12848250..1285003440S ribosomal protein S21, putative, expressed
LOC_Os03g22470Os.49505.1.S1_at11/113+12850509..12852389Desiccation-related protein PCC13-62 precursor, putative, expressed
LOC_Os03g22470Os.49505.2.S1_at10/113+12850509..12852389Desiccation-related protein PCC13-62 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006510biological_processATP-dependent proteolysis
GO:0005739cellular_componentmitochondrion
GO:0005759cellular_componentmitochondrial matrix
GO:0009534cellular_componentthylakoid (sensu Viridiplantae)
GO:0009535cellular_componentthylakoid membrane (sensu Viridiplantae)
GO:0009570cellular_componentchloroplast stroma
GO:0009840cellular_componentchloroplastic endopeptidase Clp complex
GO:0008462molecular_functionendopeptidase Clp activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9021.1.S1_at--1160--7351Chr03:12833482..12833506 (25 bp)
GTGAAAGCAGCTGTCATCCAACAAG
LOC_Os03g22430
Os.9021.1.S1_at--588--4191Chr03:12833452..12833476 (25 bp)
CCCTCCGCTGTTCATTATAGGTGGT
LOC_Os03g22430
Os.9021.1.S1_at--187--8191Chr03:12833381..12833405 (25 bp)
GGAACCATCAAGGTACTCTGCATGA
LOC_Os03g22430
Os.9021.1.S1_at--548--9351Chr03:12833303..12833327 (25 bp)
TCGCATCATTTCCACGTCAGATTTT
LOC_Os03g22430
Os.9021.1.S1_at--227--5811Chr03:12833224..12833248 (25 bp)
GACGCGGTATCAACTGAGGTCCAAA
LOC_Os03g22430
Os.9021.1.S1_at--500--8531Chr03:12833137..12833161 (25 bp)
TGGACTTCTGGGATACTGTGGCTGC
LOC_Os03g22430
Os.9021.1.S1_at--1043--1951Chr03:12833123..12833147 (25 bp)
ACTGTGGCTGCTGTAATTCTCGATC
LOC_Os03g22430
Os.9021.1.S1_at--705--3151Chr03:12833109..12833133 (25 bp)
AATTCTCGATCATCCACATGTTCAG
LOC_Os03g22430
Os.9021.1.S1_at--215--10791Chr03:12833073..12833097 (25 bp)
TTGATTCTCTGGTGTTGACCCATCA
LOC_Os03g22430
Os.9021.1.S1_at--836--9031Chr03:12833043..12833067 (25 bp)
TGCACCTACAGCTTCGGCTTATAAT
LOC_Os03g22430
Os.9021.1.S1_at--243--6671Chr03:12833011..12833035 (25 bp)
GTTGCAATCTGACGAGGCTCTACTC
NONE
Target Sequence 
GTGAAAGCAGCTGTCATCCAACAAGAATACCCCTCCGCTGTTCATTATAGGTGGTAAAAGCTCAGCGAAGTTCTTATTTA
CTGATAAGCTAGATTAAAGCAGGAACCATCAAGGTACTCTGCATGATGTCTGAATCAGAGCTAGCAAGGTTATGCATTTT
CTGGAGCAATTGATATTCCTCGCATCATTTCCACGTCAGATTTTGGTAGACATTGCTGGTATATAGTTTGGTAGTTTACA
CATTTGTTAGTAAACCTTGACGCGGTATCAACTGAGGTCCAAACATTATCAGCACGAACAGGATGGTGTCCGAGAGATAA
CATTGGTCGTTATATCCTGATGTTATGGACTTCTGGGATACTGTGGCTGCTGTAATTCTCGATCATCCACATGTTCAGTT
TCTTTATGCTTGATTCTCTGGTGTTGACCCATCACCNAGTGCACCTACAGCTTCGGCTTATAATAATAACAGTTGCAATC
TGACGAGGCTCTACTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9021.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis