Browse Element(s) Details


Os.52202.1.S1_at

Description gb:AK065579.1
DB_XREF= gi:32975597
TID=Os.52202.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52202 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013031C20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013031C20, full insert sequence.
FL= gb:AK065579.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g224504/11Rad9 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g22420NANA3+12815590..12826275AAA-type ATPase family protein, putative, expressed
LOC_Os03g22430Os.9021.1.S1_at10/113+12833027..12838187ATP-dependent Clp protease proteolytic subunit, putative, expressed
LOC_Os03g22430OsAffx.23838.2.S1_at1/113+12833027..12838187ATP-dependent Clp protease proteolytic subunit, putative, expressed
LOC_Os03g22440NANA3+12841445..12841855Rapid ALkalinization Factor family protein
LOC_Os03g22450Os.52202.1.S1_at4/113+12844276..12848021Rad9 family protein, expressed
LOC_Os03g22460Os.12774.1.S1_at11/113+12848250..1285003440S ribosomal protein S21, putative, expressed
LOC_Os03g22460Os.57468.1.S1_x_at5/113+12848250..1285003440S ribosomal protein S21, putative, expressed
LOC_Os03g22470Os.49505.1.S1_at11/113+12850509..12852389Desiccation-related protein PCC13-62 precursor, putative, expressed
LOC_Os03g22470Os.49505.2.S1_at10/113+12850509..12852389Desiccation-related protein PCC13-62 precursor, putative, expressed
LOC_Os03g22480Os.56216.1.S1_at2/113+12864929..12870668transposon protein, putative, Mutator sub-class
LOC_Os03g22480Os.14919.1.S1_at2/113+12864929..12870668transposon protein, putative, Mutator sub-class
LOC_Os03g22480OsAffx.29313.1.S1_at1/113+12864929..12870668transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006281biological_processDNA repair
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52202.1.S1_at--721--11NONE
ATCAGGTAGTGCTCCCAAAAGTTTT
NONE
Os.52202.1.S1_at--936--9831Chr03:12845636..12845660 (25 bp)
TAAATGCTCGCTACAAGCCACCAGT
LOC_Os03g22450
Os.52202.1.S1_at--953--1691Chr03:12845621..12845645 (25 bp)
AGCCACCAGTCGCTGATAATGCAAA
LOC_Os03g22450
Os.52202.1.S1_at--895--2771Chr03:12844388..12844512 (25 bp)
AAGAGCCTCCTGATGTTGTCAGTGA
LOC_Os03g22450
Os.52202.1.S1_at--633--6291Chr03:12844296..12844320 (25 bp)
GATGAGGAGCTTTTCGTCCAAACAA
LOC_Os03g22450
Os.52202.1.S1_at--683--2451Chr03:12844273..12844297 (25 bp)
AACACCGCACTACATGGACTAGGGA
NONE
Os.52202.1.S1_at--1001--511Chr03:12844249..12844273 (25 bp)
ATCGATGCTGATCCTTATACTTTAG
NONE
Os.52202.1.S1_at--325--8311Chr03:12844214..12844238 (25 bp)
GGCTATCAGCCCGATGCAAAGAGAA
NONE
Os.52202.1.S1_at--81--10711Chr03:12844158..12844182 (25 bp)
TTGCTCTTAGTTCTTTCAGGCCTGA
NONE
Os.52202.1.S1_at--526--7371Chr03:12844099..12844123 (25 bp)
GTGACTTGTTTGTATCCGATGTGGC
NONE
Os.52202.1.S1_at--960--4231Chr03:12844084..12844108 (25 bp)
CCGATGTGGCTATGGCATTTCTCAT
NONE
Target Sequence 
ATCAGGTAGTGCTCCCAAAAGTTTTGAAGTTAACAGAGAAAAATACACCCAGAAGGAGAGAAATGCCAATTCTAATGCAC
TGAATGACACATCAATGCTGCATAGTGTAAATGCTCGCTACAAGCCACCAGTCGCTGATAATGCAAACGATACAATGCAG
CCTATGCAAATGGATCACTTGGAAGAGCCTCCTGATGTTGTCAGTGATAATCCTCGATCACAGCATCACCCAAGCAATTG
GGTAGGTGCTGATGAAGATGACGATGATGACGAAGATGAGGAGCTTTTCGTCCAAACAACACCGCACTACATGGACTAGG
GATCGATGCTGATCCTTATACTTTAGGTACATATCAGGCTATCAGCCCGATGCAAAGAGAATGGACTAGAAACTAGTTAA
GTACCTTTCTCTTTGCTCTTAGTTCTTTCAGGCCTGAAGTTAACACAGAATATGTTAATCTTTTTAACAATGTGACTTGT
TTGTATCCGATGTGGCTATGGCATTTCTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52202.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis