Browse Element(s) Details


Os.12774.1.S1_at

Description gb:D12633.1
DB_XREF= gi:303838
TID=Os.12774.1
CNT=84
FEA=FLmRNA
TIER=FL+Stack
STK=7
UG=Os.12774 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) mRNA for 40S subunit ribosomal protein, complete cds.
PROD=40S subunit ribosomal protein
FL= gb:AK104084.1 gb:D12633.1 gb:AK119262.1 gb:AK073724.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2246011/1140S ribosomal protein S21, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g22420NANA3+12815590..12826275AAA-type ATPase family protein, putative, expressed
LOC_Os03g22430Os.9021.1.S1_at10/113+12833027..12838187ATP-dependent Clp protease proteolytic subunit, putative, expressed
LOC_Os03g22430OsAffx.23838.2.S1_at1/113+12833027..12838187ATP-dependent Clp protease proteolytic subunit, putative, expressed
LOC_Os03g22440NANA3+12841445..12841855Rapid ALkalinization Factor family protein
LOC_Os03g22450Os.52202.1.S1_at4/113+12844276..12848021Rad9 family protein, expressed
LOC_Os03g22460Os.12774.1.S1_at11/113+12848250..1285003440S ribosomal protein S21, putative, expressed
LOC_Os03g22460Os.57468.1.S1_x_at5/113+12848250..1285003440S ribosomal protein S21, putative, expressed
LOC_Os03g22470Os.49505.1.S1_at11/113+12850509..12852389Desiccation-related protein PCC13-62 precursor, putative, expressed
LOC_Os03g22470Os.49505.2.S1_at10/113+12850509..12852389Desiccation-related protein PCC13-62 precursor, putative, expressed
LOC_Os03g22480Os.56216.1.S1_at2/113+12864929..12870668transposon protein, putative, Mutator sub-class
LOC_Os03g22480Os.14919.1.S1_at2/113+12864929..12870668transposon protein, putative, Mutator sub-class
LOC_Os03g22480OsAffx.29313.1.S1_at1/113+12864929..12870668transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0007046biological_processribosome biogenesis
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12774.1.S1_at--1096--7811Chr03:12849785..12849809 (25 bp)
GGTCAAGCAGCAGTAGATCTTGCTA
LOC_Os03g22460
Os.12774.1.S1_at--40--2731Chr03:12849789..12849813 (25 bp)
AAGCAGCAGTAGATCTTGCTACTAG
LOC_Os03g22460
Os.12774.1.S1_at--992--9391Chr03:12849830..12849854 (25 bp)
TCGTTTCAATTTCATGTCTCTCTAG
LOC_Os03g22460
Os.12774.1.S1_at--965--3751Chr03:12849847..12849871 (25 bp)
CTCTCTAGCTACTTCATGCAATGCC
LOC_Os03g22460
Os.12774.1.S1_at--677--3711Chr03:12849851..12849875 (25 bp)
CTAGCTACTTCATGCAATGCCTGTG
LOC_Os03g22460
Os.12774.1.S1_at--686--2051Chr03:12849857..12849881 (25 bp)
ACTTCATGCAATGCCTGTGTTATCA
LOC_Os03g22460
Os.12774.1.S1_at--278--3031Chr03:12849866..12849890 (25 bp)
AATGCCTGTGTTATCAGTTCGTACT
LOC_Os03g22460
Os.12774.1.S1_at--450--2451Chr03:12849896..12849920 (25 bp)
AAAATTCGTGTGACTTGATCGGTTT
LOC_Os03g22460
Os.12774.1.S1_at--353--7471Chr03:12849903..12849927 (25 bp)
GTGTGACTTGATCGGTTTATCCTGA
LOC_Os03g22460
Os.12774.1.S1_at--1130--5671Chr03:12849907..12849931 (25 bp)
GACTTGATCGGTTTATCCTGATAAT
LOC_Os03g22460
Os.12774.1.S1_at--779--7871Chr03:12849916..12849940 (25 bp)
GGTTTATCCTGATAATGTTTTATCC
LOC_Os03g22460
Target Sequence 
GGTCAAGCAGCAGTAGATCTTGCTACTAGTTTTACCTGGAAGAACTCGTTTCAATTTCATGTCTCTCTAGCTACTTCATG
CAATGCCTGTGTTATCAGTTCGTACTCCGAAAAAATTCGTGTGACTTGATCGGTTTATCCTGATAATGTTTTATCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12774.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis