Browse Element(s) Details


Os.9022.1.S1_at

Description gb:AK063334.1
DB_XREF= gi:32973352
TID=Os.9022.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=5
UG=Os.9022 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-114-A05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-114-A05, full insert sequence.
FL= gb:AK063334.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1567011/11Protein phosphatase 2C, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g15639Os.52634.2.S1_x_at11/119+9543293..9545477expressed protein
LOC_Os09g15639Os.36453.1.S1_at2/119+9543293..9545477expressed protein
LOC_Os09g15650NANA9+9549098..9550318hypothetical protein
LOC_Os09g15660OsAffx.17721.1.S1_at11/119+9553910..9555217hypothetical protein
LOC_Os09g15670Os.9022.1.S1_at11/119+9566470..9567889Protein phosphatase 2C, putative, expressed
LOC_Os09g15680Os.32340.1.S1_at11/119+9569652..9570654hypothetical protein
LOC_Os09g15690NANA9+9572399..9572617hypothetical protein
LOC_Os09g15700Os.48036.1.A1_at11/119+9576709..9580076Leucine Rich Repeat family protein, expressed
LOC_Os09g15710NANA9+9588205..9590906hypothetical protein
LOC_Os09g15720OsAffx.29860.1.S1_at10/119+9592569..9594102hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006470biological_processprotein amino acid dephosphorylation
GO:0009408biological_processresponse to heat
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0009738biological_processabscisic acid mediated signaling
GO:0008287cellular_componentprotein serine/threonine phosphatase complex
GO:0004722molecular_functionprotein serine/threonine phosphatase activity
GO:0005509molecular_functioncalcium ion binding
GO:0015071molecular_functionprotein phosphatase type 2C activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9022.1.S1_at--424--1031Chr09:9567405..9567429 (25 bp)
AGGTCGGACTTCGACGAGTGCCTCA
LOC_Os09g15670
Os.9022.1.S1_at--163--1951Chr09:9567442..9567466 (25 bp)
ACGGCCTCTGGGACGTCGTCAGCAA
LOC_Os09g15670
Os.9022.1.S1_at--557--1591Chr09:9567570..9567594 (25 bp)
AGCTCCGACAACATCTCTGTCGTCG
LOC_Os09g15670
Os.9022.1.S1_at--1011--4051Chr09:9567609..9567633 (25 bp)
CGAGGCAACGCCTTGTAGAGAGAGT
LOC_Os09g15670
Os.9022.1.S1_at--900--6011Chr09:9567626..9567650 (25 bp)
GAGAGAGTGTCACCCAGCTGATGCT
LOC_Os09g15670
Os.9022.1.S1_at--1156--611Chr09:9567646..9567670 (25 bp)
ATGCTGTAGCATCAGTACTAGTATT
LOC_Os09g15670
Os.9022.1.S1_at--683--4831Chr09:9567681..9567705 (25 bp)
GCTAAGCTAATGGTTCTACTAATCT
LOC_Os09g15670
Os.9022.1.S1_at--728--10571Chr09:9567743..9567767 (25 bp)
TTCTCTTCTAATTTTCTCCCTGAAT
LOC_Os09g15670
Os.9022.1.S1_at--1024--9791Chr09:9567768..9567792 (25 bp)
TAACCAAGTTCAGTGGAGCACATAG
LOC_Os09g15670
Os.9022.1.S1_at--1131--5131Chr09:9567811..9567835 (25 bp)
GCAACTGCTAGTTGGTGTAACCAGA
LOC_Os09g15670
Os.9022.1.S1_at--1073--5211Chr09:9567834..9567858 (25 bp)
GAATTTCATCTGGATACCAACTGAA
LOC_Os09g15670
Target Sequence 
AGGTCGGACTTCGACGAGTGCCTCATCCTCGCCAGCGACGGCCTCTGGGACGTCGTCAGCAACGAGGCCGCGTGCGAGGT
GGCGCAGTCGTGCCTCCGCCGCGGCAGGCAGCGGTGGTGCGCCGAGGCGGCGGCGGTGCTGACCAAGCTGGCCCTCGCTC
GCCGCAGCTCCGACAACATCTCTGTCGTCGTCGTCGATCTCCGGCGAGGCAACGCCTTGTAGAGAGAGTGTCACCCAGCT
GATGCTGTAGCATCAGTACTAGTATTGCAGATATTAGCTAAGCTAATGGTTCTACTAATCTTTTTTTTTCATTTCCCTTG
TGTTAAAAATCATTTTTTTTCTCTTCTAATTTTCTCCCTGAATTAACCAAGTTCAGTGGAGCACATAGATCAGGTGATGG
GGTTGTGCAACTGCTAGTTGGTGTAACCAGAATTTCATCTGGATACCAACTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9022.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis