Browse Element(s) Details


Os.9033.1.S1_at

Description gb:AK067192.1
DB_XREF= gi:32977210
TID=Os.9033.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.9033 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013098A04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013098A04, full insert sequence.
FL= gb:AK067192.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4461010/11IQ calmodulin-binding motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g44560Os.51162.1.S1_at11/113+25047207..25051073expressed protein
LOC_Os03g44560OsAffx.13345.1.S1_at10/113+25047207..25051073expressed protein
LOC_Os03g44580Os.18246.1.S1_at11/113+25056028..25058800expressed protein
LOC_Os03g44590NANA3+25061381..25064807transposon protein, putative, Mutator sub-class
LOC_Os03g44600OsAffx.27271.1.S1_at11/113+25065210..25065793hypothetical protein
LOC_Os03g44610Os.9033.1.S1_at10/113+25070355..25078460IQ calmodulin-binding motif family protein, expressed
LOC_Os03g44620Os.46241.1.S1_s_at11/113+25081435..25085183DnaJ protein homolog, putative, expressed
LOC_Os03g44620Os.46241.2.S1_s_at11/113+25081435..25085183DnaJ protein homolog, putative, expressed
LOC_Os03g44630Os.55267.1.S1_at11/113+25085236..25085992Plastocyanin-like domain containing protein, expressed
LOC_Os03g44636OsAffx.25539.1.S1_at11/113+25089731..25090282Zinc finger, C3HC4 type family protein, expressed
LOC_Os03g44642NANA3+25091335..25091829Zinc finger, C3HC4 type family protein
LOC_Os03g44650OsAffx.13346.1.S1_at11/113+25093821..25094795Glutaredoxin family protein
LOC_Os03g44660Os.16447.1.S1_at11/113+25096714..25100593Pyrimidine 5'-nucleotidase family protein, expressed
LOC_Os03g44670Os.7277.1.S1_s_at11/113+25101804..25105719expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0019761biological_processglucosinolate biosynthesis
GO:0005634cellular_componentnucleus
GO:0005516molecular_functioncalmodulin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9033.1.S1_at--316--7151Chr03:25071375..25071399 (25 bp)
GTCTTTGTCCACATGCCAACCAAAA
LOC_Os03g44610
Os.9033.1.S1_at--247--7511NONE
GTGGTTATCTCTGCCAACTAATGTT
NONE
Os.9033.1.S1_at--650--2531Chr03:25070776..25070800 (25 bp)
AACTCGATTTGCAGATCCACCAGTG
LOC_Os03g44610
Os.9033.1.S1_at--433--3971Chr03:25070731..25070755 (25 bp)
CGGGCAAATGCTTCTAACCAATCCA
LOC_Os03g44610
Os.9033.1.S1_at--291--6051Chr03:25070695..25070719 (25 bp)
GAGTTGCAGGCCTGATTGCACATTC
LOC_Os03g44610
Os.9033.1.S1_at--633--4731Chr03:25070622..25070646 (25 bp)
GCTGTGCATGCTACTTCTATGTACA
LOC_Os03g44610
Os.9033.1.S1_at--784--7471Chr03:25070549..25070573 (25 bp)
GTGTGTTTCGTATTTTTCTTGTGCA
LOC_Os03g44610
Os.9033.1.S1_at--315--1931Chr03:25070525..25070549 (25 bp)
ACGGTTGTGGGTATGTCGTGCCATA
LOC_Os03g44610
Os.9033.1.S1_at--1143--7191Chr03:25070511..25070535 (25 bp)
GTCGTGCCATATTTTTCTTTTGCAT
LOC_Os03g44610
Os.9033.1.S1_at--470--5071Chr03:25070394..25070418 (25 bp)
GCAGCTGTCTTTCTTTCCTTATAAA
LOC_Os03g44610
Os.9033.1.S1_at--1116--331Chr03:25070374..25070398 (25 bp)
ATAAATTCAAATCTGCCCCTTCTTT
LOC_Os03g44610
Target Sequence 
GTCTTTGTCCACATGCCAACCAAAAGCCAAGCTTGNGCAAGCGAATACTCCAGTCAAGAAGTGGTTATCTCTGCCAACTA
ATGTTGGTGGGGGANCAGCAAAGGGCGCGACCAACAGCAACTCGATTTGCAGATCCACCAGTGCCAAGTCTGATCCAAAA
CCACGGGCAAATGCTTCTAACCAATCCAGGAAGCAAGTTGAGTTGCAGGCCTGATTGCACATTCCCCTTTCCCTCTGACT
TCGGTAAGTCATTTCTTATTTGCTGTCCTCCAGCTGTGCATGCTACTTCTATGTACATAATTTTTTTCCAAGAAAAGAAT
ACTGTATCTTAGATCTTGGTTGGTGGTGTGTTTCGTATTTTTCTTGTGCACGGTTGTGGGTATGTCGTGCCATATTTTTC
TTTTGCATTTCCATCAGTTTTTTTACCCTCTTGTATGTTGTTGTGAGTTTTGAAAGAAGGAACTATGTTATGTCTGAAAA
GTGTGGTCCTGTGCAGCATTGCAGCTGTCTTTCTTTCCTTATAAATTCAAATCTGCCCCTTCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9033.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis