Browse Element(s) Details


Os.9072.1.S1_at

Description gb:AK062973.1
DB_XREF= gi:32972991
TID=Os.9072.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.9072 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-109-E07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-109-E07, full insert sequence.
FL= gb:AK062973.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3036011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g30310OsAffx.11451.4.S1_x_at1/1111+17097206..17098828Reticuline oxidase precursor, putative
LOC_Os11g30320OsAffx.31224.1.S1_at7/1111+17101382..17102759hypothetical protein
LOC_Os11g30320OsAffx.13325.1.S1_at1/1111+17101382..17102759hypothetical protein
LOC_Os11g30330OsAffx.31225.1.S1_at11/1111+17106929..17108855hypothetical protein
LOC_Os11g30340OsAffx.31226.1.S1_at11/1111+17112092..17112614hypothetical protein
LOC_Os11g30350Os.54912.1.S1_at11/1111+17113874..17115312CBS domain-containing protein, putative, expressed
LOC_Os11g30350Os.54912.1.S1_s_at11/1111+17113874..17115312CBS domain-containing protein, putative, expressed
LOC_Os11g30350OsAffx.31227.1.S1_at8/1111+17113874..17115312CBS domain-containing protein, putative, expressed
LOC_Os11g30360Os.9072.1.S1_at11/1111+17123166..17123706expressed protein
LOC_Os11g30370OsAffx.19085.1.S1_at11/1111+17128885..17130188expressed protein
LOC_Os11g30370OsAffx.2442.1.S1_x_at1/1111+17128885..17130188expressed protein
LOC_Os11g30380NANA11+17137848..17138267SBP domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0031225cellular_componentanchored to membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9072.1.S1_at--538--8791Chr11:17123185..17123209 (25 bp)
TGTTCATAGGGCTGGTGCTGTTCAT
LOC_Os11g30360
Os.9072.1.S1_at--904--991Chr11:17123253..17123277 (25 bp)
AGGATCGTGGAGTTCGGCAACTTCC
LOC_Os11g30360
Os.9072.1.S1_at--581--7491Chr11:17123259..17123283 (25 bp)
GTGGAGTTCGGCAACTTCCAGACCA
LOC_Os11g30360
Os.9072.1.S1_at--427--7091Chr11:17123349..17123373 (25 bp)
GTCAACGTCCACATGTACCTCGGCT
LOC_Os11g30360
Os.9072.1.S1_at--511--7271Chr11:17123355..17123379 (25 bp)
GTCCACATGTACCTCGGCTAGCTAG
LOC_Os11g30360
Os.9072.1.S1_at--362--3911Chr11:17123403..17123427 (25 bp)
CTGGCTCTGGCATGTGAAATGTTCA
LOC_Os11g30360
Os.9072.1.S1_at--311--7372Chr11:17123416..17123440 (25 bp)
GTGAAATGTTCATCGATCAGCTAAA
LOC_Os11g30360
Os.9072.1.S1_at--706--6731Chr11:17123423..17123447 (25 bp)
GTTCATCGATCAGCTAAATTAATTA
LOC_Os11g30360
Os.9072.1.S1_at--625--3111Chr11:17123494..17123518 (25 bp)
AATTTGGGCTAGCTAGCAATTTGAT
LOC_Os11g30360
Os.9072.1.S1_at--801--5191Chr11:17123509..17123533 (25 bp)
GCAATTTGATTACTACTGTTCTCTG
LOC_Os11g30360
Os.9072.1.S1_at--976--6551Chr11:17123516..17123540 (25 bp)
GATTACTACTGTTCTCTGAGTTTTA
LOC_Os11g30360
Target Sequence 
TGTTCATAGGGCTGGTGCTGTTCATCCTGCTGTCGCCGGGNCTGCTGTTCCAGATCCCGGGGAAGGGGAGGATCGTGGAG
TTCGGCAACTTCCAGACCAGCGGCCTCTCCATCCTCGTCCACTCCATCATCTACTTCGCGCTCATCGCCATCTTCCTCCT
CGCCGTCAACGTCCACATGTACCTCGGCTAGCTAGCTAGCTAGCTAGGAGGTACCATGNCTGGCTCTGGCATGTGAAATG
TTCATCGATCAGCTAAATTAATTACTAGCATTTATGCAAGAATGGTATTATATATANATATGANTTTCTTAATTTGGGCT
AGCTAGCAATTTGATTACTACTGTTCTCTGAGTTTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9072.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis