Browse Element(s) Details


Os.9079.1.S1_at

Description gb:AK122017.1
DB_XREF= gi:37991640
TID=Os.9079.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.9079 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033111M07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033111M07, full insert sequence.
FL= gb:AK122017.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g086201/11B3 DNA binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g08570Os.2330.1.S1_at11/113+4388192..4393919Phytoene dehydrogenase, chloroplast precursor, putative, expressed
LOC_Os03g08570OsAffx.7731.1.S1_at1/113+4388192..4393919Phytoene dehydrogenase, chloroplast precursor, putative, expressed
LOC_Os03g08580Os.21260.1.S1_at11/113+4395750..4398234expressed protein
LOC_Os03g08590OsAffx.12785.1.S1_at11/113+4398190..4398499hypothetical protein
LOC_Os03g08600Os.50009.1.S1_at11/113+4407955..4413278glycogenin glucosyltransferase, putative, expressed
LOC_Os03g08610Os.9148.1.S1_at11/113+4413677..4417010leucine-rich repeat family protein, putative, expressed
LOC_Os03g08620Os.9079.1.S1_at1/113+4416899..4418991B3 DNA binding domain containing protein, expressed
LOC_Os03g08630Os.52148.1.S1_at11/113+4423132..4425588dihydrokaempferol 4-reductase, putative, expressed
LOC_Os03g08640Os.15759.1.S1_at11/113+4425830..4428044Origin recognition complex subunit 2, putative, expressed
LOC_Os03g08660OsAffx.25032.1.S1_s_at2/113+4443307..4444212satase isoform II, putative

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9079.1.S1_at--861--5471Chr03:4416912..4416936 (25 bp)
GAACATGGTACAACTTTTGGCGTTT
LOC_Os03g08620
Os.9079.1.S1_at--526--671Chr03:4416873..4416897 (25 bp)
ATGAACTGCTTCTTTGACCTAACAA
NONE
Os.9079.1.S1_at--438--3311Chr03:4416764..4416788 (25 bp)
CACATCAATCTTTCAACTCACATAC
NONE
Os.9079.1.S1_at--1105--551Chr03:4416720..4416744 (25 bp)
ATCCTACAGTTTCTGAAGCCTTCGC
NONE
Os.9079.1.S1_at--772--6431Chr03:4416633..4416657 (25 bp)
GATCATCTCAGATATTCCTTCCTTT
NONE
Os.9079.1.S1_at--407--9731Chr03:4416602..4416626 (25 bp)
TCAATTAAGTTTGTTCCCCTCAGTC
NONE
Os.9079.1.S1_at--69--10511Chr03:4416467..4416491 (25 bp)
TTCAGGTTTGTTTTTCAGGCTCTCT
NONE
Os.9079.1.S1_at--1078--891Chr03:4416451..4416475 (25 bp)
AGGCTCTCTGGTATCTGGCCGGTGA
NONE
Os.9079.1.S1_at--765--6051Chr03:4416309..4416333 (25 bp)
GAGATTGGTGAGTGTTCCCAGCGAT
NONE
Os.9079.1.S1_at--703--4611Chr03:4416289..4416313 (25 bp)
GCGATGGGCTGATTGGTCCACTTAA
NONE
Os.9079.1.S1_at--344--4371NONE
CCACTTAACTGGATTGCCCTCAAAA
NONE
Target Sequence 
GAACATGGTACAACTTTTGGCGTTTAGATTGGTTAGATNATGAACTGCTTCTTTGACCTAACAATTATCCTACACTAATG
CCATCTAATGCAGCATGTACAACAAATACTAATAACACAAAATGGNTCAAAAGGATGATGCTAAATATCACATCAATCTT
TCAACTCACATACAGCATCATACATGAATATCATCCTACAGTTTCTGAAGCCTTCGCTCTTCTCCCTTCATCATCAAACT
GTATCTTTCTGTACATAAATGTAACATTAGATTGGNAATGATCATCTCAGATATTCCTTCCTTTCCAGCCTCAATTAAGT
TTGTTCCCCTCAGTCCTCATGTCAAGTTCAGGTTTGTTTTTCAGGCTCTCTGGTATCTGGCCGGTGAGATTGTTGTTGTT
CAGGTATAGCTCCNTGAGATTGGTGAGTGTTCCCAGCGATGGGCTGATTGGTCCACTTAACTGGATTGCCCTCAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9079.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis