Browse Element(s) Details


Os.9103.1.S1_at

Description gb:AK068208.1
DB_XREF= gi:32978226
TID=Os.9103.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9103 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013149O20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013149O20, full insert sequence.
FL= gb:AK068208.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0993011/11heavy metal-associated domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g09880Os.26886.3.S1_x_at5/119+5372270..5374477transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g09890NANA9+5375584..5376696transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g09900Os.26886.6.S1_s_at7/119+5376937..5378678hypothetical protein
LOC_Os09g09900Os.26886.2.S1_s_at7/119+5376937..5378678hypothetical protein
LOC_Os09g09900OsAffx.16467.1.S1_at6/119+5376937..5378678hypothetical protein
LOC_Os09g09900OsAffx.3425.1.S1_at1/119+5376937..5378678hypothetical protein
LOC_Os09g09910NANA9+5384521..5388015retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g09920OsAffx.17624.1.S1_at10/119+5390032..5391931hypothetical protein
LOC_Os09g09930Os.9103.1.S1_at11/119+5394176..5395710heavy metal-associated domain containing protein, expressed
LOC_Os09g09940OsAffx.17625.1.S1_at11/119+5399926..5400679hypothetical protein
LOC_Os09g09944OsAffx.17626.1.S1_s_at11/119+5401725..5403107expressed protein
LOC_Os09g09950Os.13861.1.S1_at2/119+5413271..5418455retrotransposon protein, putative, unclassified, expressed
LOC_Os09g09960NANA9+5419149..5423600retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0046872molecular_functionmetal ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9103.1.S1_at--610--5491Chr09:5394787..5394811 (25 bp)
GAACAGGATCCTGGCTGCAGCATCA
LOC_Os09g09930
Os.9103.1.S1_at--170--3411Chr09:5394685..5394709 (25 bp)
CAGAATCAGGCCAAGGTTTGTGCAT
LOC_Os09g09930
Os.9103.1.S1_at--776--7731Chr09:5394653..5394677 (25 bp)
GGTGGATCATGCAAGGTCAGGCCAA
LOC_Os09g09930
Os.9103.1.S1_at--976--1011Chr09:5394640..5394664 (25 bp)
AGGTCAGGCCAAGATGATCCAAGAA
LOC_Os09g09930
Os.9103.1.S1_at--1132--5331Chr09:5394618..5394642 (25 bp)
GAAGTTTGCGAGTTTGATCTTTGAT
LOC_Os09g09930
Os.9103.1.S1_at--170--2251Chr09:5394546..5394570 (25 bp)
AAATTCTGTCGAATGCTGCAGCTGA
LOC_Os09g09930
Os.9103.1.S1_at--477--1191Chr09:5394518..5394542 (25 bp)
AGTAGCTTTCTGTTCATGCTTTTTT
LOC_Os09g09930
Os.9103.1.S1_at--943--651Chr09:5394375..5394399 (25 bp)
ATGCACTCAGTTTTTTCTCTGAATT
LOC_Os09g09930
Os.9103.1.S1_at--459--1251Chr09:5394325..5394349 (25 bp)
AGATTTGGGACTTGTCGTGTCACCT
LOC_Os09g09930
Os.9103.1.S1_at--1067--7431Chr09:5394309..5394333 (25 bp)
GTGTCACCTCGTGTATATTGGGTTT
LOC_Os09g09930
Os.9103.1.S1_at--1121--10431Chr09:5394272..5394296 (25 bp)
TTAGGAACCAGAGGTCTTTCTGCTT
LOC_Os09g09930
Target Sequence 
GAACAGGATCCTGGCTGCAGCATCATGTAAAAGATTGTGAGTATCAATCAGAGGAGCTANAATCTGGCAAAAACTATGGA
GAATTATTAAGGTATTTGAGTTCAGAATCAGGCCAAGGTTTGTGCATGGCTTGAGGTGGATCATGCAAGGTCAGGCCAAG
ATGATCCAAGAAGTTTGCGAGTTTGATCTTTGATGAGCTGCATCATCGATCTGATCTGCAAAGGTGGTGAAAAAAAANGG
CAAAATTCTGTCGAATGCTGCAGCTGAAGAAGTAGCTTTCTGTTCATGCTTTTTTTTTTAAATGTGAAGCACTAGTAGAC
TAGTAGTAGTGTTTTCAATTATCCTTTTTCTTTCTGCGAGTATTTAGTGTTATTATCCGAAATAGNGGTTGAAATAAAGA
GCATCTGTACATTATGCACTCAGTTTTTTCTCTGAATTTTATCAGCTTTCAGAGAAGTGCTGAAGATTTGGGACTTGTCG
TGTCACCTCGTGTATATTGGGTTTGGATGTTTTTAGTTAGGAACCAGAGGTCTTTCTGCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9103.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis