Browse Element(s) Details


Os.13861.1.S1_at

Description gb:CA764012
DB_XREF= gi:27545819
DB_XREF=AF53-Rpf_01D_J10_T7.ab1
CLONE=C0000226
TID=Os.13861.1
CNT=6
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.13861 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g099502/11retrotransposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g09920OsAffx.17624.1.S1_at10/119+5390032..5391931hypothetical protein
LOC_Os09g09930Os.9103.1.S1_at11/119+5394176..5395710heavy metal-associated domain containing protein, expressed
LOC_Os09g09940OsAffx.17625.1.S1_at11/119+5399926..5400679hypothetical protein
LOC_Os09g09944OsAffx.17626.1.S1_s_at11/119+5401725..5403107expressed protein
LOC_Os09g09950Os.13861.1.S1_at2/119+5413271..5418455retrotransposon protein, putative, unclassified, expressed
LOC_Os09g09960NANA9+5419149..5423600retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g09970Os.46314.2.S1_x_at6/119+5425226..5427804retrotransposon protein, putative, unclassified
LOC_Os09g09970Os.47114.1.S1_x_at1/119+5425226..5427804retrotransposon protein, putative, unclassified
LOC_Os09g09970Os.10731.2.A1_at1/119+5425226..5427804retrotransposon protein, putative, unclassified
LOC_Os09g09980Os.16809.1.S1_at11/119+5429895..5432234Glucan endo-1,3-beta-glucosidase 5 precursor, putative, expressed
LOC_Os09g09990Os.14919.1.S1_at5/119+5434182..5441247transposon protein, putative, Mutator sub-class
LOC_Os09g09990Os.56216.1.S1_at2/119+5434182..5441247transposon protein, putative, Mutator sub-class
LOC_Os09g09990OsAffx.29313.1.S1_at1/119+5434182..5441247transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.13861.1.S1_at--902--2271Chr09:5413811..5413835 (25 bp)
AAATCGTCTAATCGTAATGTGCAAG
LOC_Os09g09950
Os.13861.1.S1_at--210--9771Chr09:5413478..5413821 (25 bp)
TAATGTGCAAGGTCACGGAACTAGT
LOC_Os09g09950
Os.13861.1.S1_at--323--6991NONE
GTCACGGAACTAGTAGGTCCATGAA
NONE
Os.13861.1.S1_at--739--5471NONE
GAACTAACTCCAGATCCTACTGAAT
NONE
Os.13861.1.S1_at--945--3431NONE
CAGATCCTACTGAATACGCAACGGG
NONE
Os.13861.1.S1_at--57--3352Chr09:5625758..5625782 (25 bp)
CACGGTTTTGTGTAGCTGTTATTGG
NONE
Os.13861.1.S1_at--653--6751NONE
GTTAAGAATTAGTGTCTGCGCTGAA
NONE
Os.13861.1.S1_at--81--6691NONE
GTTGCTGGAGTTTGTAACTTCTTAA
NONE
Os.13861.1.S1_at--520--9011Chr09:5413130..5413154 (25 bp)
TGAATATGCTTCCTCAGTAGCCACC
NONE
Os.13861.1.S1_at--438--2791Chr09:5413081..5413105 (25 bp)
AAGTTGTATTTTCATTGTCAAGTAC
NONE
Os.13861.1.S1_at--490--10531NONE
TTCATTGTCAAGTACTTAAGTGCTT
NONE
Target Sequence 
AAATCGTCTAATCGTAATGTGCAAGGTCACGGAACTAGTAGGTCCATGAAAGGAAGGACNACAGAACTAACTCCAGATCC
TACTGAATACGCAACGGGAAGGGGGNGCAACCAGACTCACACTTCCTCACGGTTTTGTGTAGCTGTTATTGGAGGATTTG
ATATGTTAAGAATTAGTGTCTGCGCTGAAGTTTCTGAATATTGNNNCNATTGTTGCTGGAGTTTGTAACTTCTTAAGAAT
TGGTGTCTTTGCCGATGTTTTTGAATATGCTTCCTCAGTAGCCACCNTTGAGATGTTAGCATTTAGTTTTAAAGTTGTAT
TTTCATTGTCAAGTACTTAAGTGCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.13861.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis