Browse Element(s) Details


Os.9109.1.S1_a_at

Description gb:AK121797.1
DB_XREF= gi:37991420
TID=Os.9109.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.9109 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-031-C04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033095P18, full insert sequence.
FL= gb:AK121797.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0866011/11haloacid dehalogenase-like hydrolase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g08630Os.31312.2.S1_x_at4/119+4512274..4515617retrotransposon protein, putative, unclassified
LOC_Os09g08630Os.31312.5.S1_x_at4/119+4512274..4515617retrotransposon protein, putative, unclassified
LOC_Os09g08640OsAffx.22492.1.S1_at1/119+4516251..4522405retrotransposon protein, putative, unclassified
LOC_Os09g08640OsAffx.22492.1.S1_x_at1/119+4516251..4522405retrotransposon protein, putative, unclassified
LOC_Os09g08650NANA9+4525474..4531479retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g08660Os.9109.1.S1_a_at11/119+4534277..4542655haloacid dehalogenase-like hydrolase family protein, expressed
LOC_Os09g08670Os.54495.1.S1_at5/119+4553930..4554720expressed protein
LOC_Os09g08680OsAffx.6211.1.S1_x_at11/119+4555816..4567790expressed protein
LOC_Os09g08680Os.26513.1.A1_at11/119+4555816..4567790expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0008967molecular_functionphosphoglycolate phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9109.1.S1_a_at--952--831Chr09:4536320..4536339 (20 bp)
ATGGACTTCCTCTTGAAAAGCTTCA
LOC_Os09g08660
Os.9109.1.S1_a_at--524--2411Chr09:4534802..4534823 (22 bp)
AAACACTACTTGTTCTGTCTGGCGT
LOC_Os09g08660
Os.9109.1.S1_a_at--1154--8471Chr09:4534681..4534704 (24 bp)
TGGCGTGACTACCTTACCAGAACTT
LOC_Os09g08660
Os.9109.1.S1_a_at--266--5791Chr09:4534653..4534677 (25 bp)
GACGCTTCAAATACTATCCATCCAG
LOC_Os09g08660
Os.9109.1.S1_a_at--1018--331Chr09:4534558..4534582 (25 bp)
ATACAGTTCTATCAGTTCTGCCTGC
LOC_Os09g08660
Os.9109.1.S1_a_at--420--9071Chr09:4534514..4534538 (25 bp)
TGCTTCGAGTACCACCTATCTAAAA
LOC_Os09g08660
Os.9109.1.S1_a_at--664--6471Chr09:4534460..4534484 (25 bp)
GTTGGGTTAATTGAGCTGCCTTCTA
LOC_Os09g08660
Os.9109.1.S1_a_at--851--1591Chr09:4534447..4534471 (25 bp)
AGCTGCCTTCTATTCTTTGGGTTAG
LOC_Os09g08660
Os.9109.1.S1_a_at--1083--4271Chr09:4534407..4534431 (25 bp)
CCTGACCTCTATACTACTTACAACA
LOC_Os09g08660
Os.9109.1.S1_a_at--793--5331Chr09:4534362..4534386 (25 bp)
GAAGTCAATTTCACAGCCCCATACA
LOC_Os09g08660
Os.9109.1.S1_a_at--401--4531Chr09:4534347..4534371 (25 bp)
GCCCCATACATGTAGATTGCCATTG
LOC_Os09g08660
Target Sequence 
ATGGACTTCCTCTTGAAAAGCTTCAATTTGGAGACATCAAGAATGTGCATGGTCGGTGACAGACTAGACACTGACATACT
ATTTNGGCCAGAACACTGGTTGCAAAACACTACTTGTTCTGTCTGGCGTGACTACCTTACCAGAACTTCAGGACGCTTCA
AATACTATCCATCCAGATCTTTATACNAACAGCGTATATGATCTGGTGGGATTATTGCAACAGTAATCTTTGATTTGCCA
TTGAAGATACAGTTCTATCAGTTCTGCCTGCCCCCACCAGAACTCTAGGATGCTTCGAGTACCACCTATCTAAAAAATAA
CACCATATATGAATATATGATGCAGTTGGGTTAATTGAGCTGCCTTCTATTCTTTGGGTTAGCTGATTGATAGCAACCCT
GACCTCTATACTACTTACAACAAATTTAAGTGCTACCATTTTGAAGTCAATTTCACAGCCCCATACATGTAGATTGCCAT
TG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9109.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis