Browse Element(s) Details


Os.9137.1.S1_at

Description gb:AK060866.1
DB_XREF= gi:32970884
TID=Os.9137.1
CNT=49
FEA=FLmRNA
TIER=FL+Stack
STK=7
UG=Os.9137 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033065N21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-034-H02, full insert sequence.
FL= gb:AK060866.1 gb:AK073739.1 gb:AK111563.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3920011/11seed maturation protein PM23, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g39170OsAffx.20023.1.S1_at10/1112+24075037..24081156Serine carboxypeptidase family protein
LOC_Os12g39170Os.20341.1.S1_s_at1/1112+24075037..24081156Serine carboxypeptidase family protein
LOC_Os12g39180Os.19075.1.S1_at10/1112+24086315..24090178Metal transporter Nramp2, putative, expressed
LOC_Os12g39190NANA12+24097238..24101056retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g39200Os.9137.1.S1_at11/1112+24104229..24108313seed maturation protein PM23, putative, expressed
LOC_Os12g39210Os.57113.1.S1_at11/1112+24109067..24111268G2/mitotic-specific cyclin C13-1, putative, expressed
LOC_Os12g39220Os.35718.1.S1_at11/1112+24111988..24113008Zinc finger protein 7, putative, expressed
LOC_Os12g39230OsAffx.7835.1.S1_at10/1112+24114593..24116967hypothetical protein
LOC_Os12g39240OsAffx.20024.1.S1_x_at11/1112+24121390..24123404Cytochrome P450 family protein
LOC_Os12g39240OsAffx.20024.1.S1_at11/1112+24121390..24123404Cytochrome P450 family protein
LOC_Os12g39240OsAffx.28081.1.S1_x_at1/1112+24121390..24123404Cytochrome P450 family protein
LOC_Os12g39250OsAffx.32091.1.S1_at8/1112+24126935..24127811hypothetical protein
LOC_Os12g39260NANA12+24129827..24134840retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9137.1.S1_at--1107--4531Chr12:24107548..24107654 (25 bp)
GCCCGTCTATTATTCTGGTGCATGA
LOC_Os12g39200
Os.9137.1.S1_at--320--611Chr12:24107654..24107678 (25 bp)
ATGCTGGGCCATTACATCCGAGGTC
LOC_Os12g39200
Os.9137.1.S1_at--266--8271Chr12:24107710..24107734 (25 bp)
GGCAGTCTCCAGTGATGCACATTCA
LOC_Os12g39200
Os.9137.1.S1_at--999--711Chr12:24107734..24107758 (25 bp)
ATGATCTCCCCTAGTCTGGTAGCAA
LOC_Os12g39200
Os.9137.1.S1_at--803--3011Chr12:24107764..24107788 (25 bp)
AATGCTCTGCAAAGCTTCTGTCAGC
LOC_Os12g39200
Os.9137.1.S1_at--74--1611Chr12:24107786..24107810 (25 bp)
AGCTGAACGAACTACTTCTGCATGA
LOC_Os12g39200
Os.9137.1.S1_at--52--7131Chr12:24107941..24107965 (25 bp)
GTCATGGTCCCTGCAGTAGCTCGAA
LOC_Os12g39200
Os.9137.1.S1_at--390--10731Chr12:24107976..24108000 (25 bp)
TTGCTCAGTAGCGTCAGATTTCCAT
LOC_Os12g39200
Os.9137.1.S1_at--1134--2971Chr12:24108028..24108052 (25 bp)
AATGTGCTTTTCACCTTCTTGTTAG
LOC_Os12g39200
Os.9137.1.S1_at--874--1191Chr12:24108087..24108111 (25 bp)
AGTATACAGTATTTCCTCACCGATG
LOC_Os12g39200
Os.9137.1.S1_at--190--2591Chr12:24108133..24108157 (25 bp)
AACGTTGGTGTTGCATCCTGTATAT
LOC_Os12g39200
Target Sequence 
GCCCGTCTATTATTCTGGTGCATGATGCTGGGCCATTACATCCGAGGTCAGGAGTGCCGGCTTGAGCTGATGCACCTCCT
GGCAGTCTCCAGTGATGCACATTCATGATCTCCCCTAGTCTGGTAGCAACAGCAAATGCTCTGCAAAGCTTCTGTCAGCT
GAACGAACTACTTCTGCATGACAAAGACGGAAACAGGAAACTCTCAAGCATCATGCGAATCGATCCAATTTGGATGCTGC
AACATTAGTATGGGGATACATAGGAGAGGGAGAAGAGGAGCAAACCCATGGATGGCCAAGGTAGAGGTCAGGTCATGGTC
CCTGCAGTAGCTCGAACCAGGTTGGGTTGCTCAGTAGCGTCAGATTTCCATATAGGATTAACCATTTCATCATGGTTAAA
TGTGCTTTTCACCTTCTTGTTAGTTTGTGTTGTGCTATGTGTACAAATCCTGGAGTTAGTATACAGTATTTCCTCACCGA
TGTACTGGTATTTTGGTTGTAGCAACGTTGGTGTTGCATCCTGTATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9137.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis