Browse Element(s) Details


Os.9145.1.S1_at

Description gb:AY435404.1
DB_XREF= gi:37694730
TID=Os.9145.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9145 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) NADP malic enzyme mRNA, complete cds.
PROD=NADP malic enzyme
FL= gb:AY435404.1 gb:AK099249.1 gb:AK070360.1 gb:AK071155.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0944011/11NADP-dependent malic enzyme, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g09380Os.6365.1.S1_at11/115+5245044..5248797actin binding protein family, putative, expressed
LOC_Os05g09389OsAffx.14261.2.S1_at11/115+5252219..5253360Transposable element protein, putative, rve
LOC_Os05g09389OsAffx.14261.4.S1_x_at1/115+5252219..5253360Transposable element protein, putative, rve
LOC_Os05g09400Os.7914.2.S1_at11/115+5253550..5257112expressed protein
LOC_Os05g09400OsAffx.26384.8.S1_x_at11/115+5253550..5257112expressed protein
LOC_Os05g09400Os.7914.1.S1_at10/115+5253550..5257112expressed protein
LOC_Os05g09400Os.46102.1.S1_at10/115+5253550..5257112expressed protein
LOC_Os05g09410OsAffx.4286.1.S1_at11/115+5257925..5259624Histidine-containing phosphotransfer protein 4, putative
LOC_Os05g09420OsAffx.26798.1.S1_at8/115+5266074..5268258hypothetical protein
LOC_Os05g09430OsAffx.26799.1.S1_at11/115+5271925..5272683expressed protein
LOC_Os05g09440Os.9145.1.S1_at11/115+5272909..5276768NADP-dependent malic enzyme, chloroplast precursor, putative, expressed
LOC_Os05g09450OsAffx.14612.1.S1_at11/115+5281260..5282687hypothetical protein
LOC_Os05g09460OsAffx.4287.1.S1_at9/115+5289032..5291296hypothetical protein
LOC_Os05g09470OsAffx.8965.1.S1_at1/115+5298616..5301279hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006108biological_processmalate metabolism
GO:0006633biological_processfatty acid biosynthesis
GO:0009051biological_processpentose-phosphate shunt, oxidative branch
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0009845biological_processseed germination
GO:0005739cellular_componentmitochondrion
GO:0009507cellular_componentchloroplast
GO:0004470molecular_functionmalic enzyme activity
GO:0004473molecular_functionmalate dehydrogenase (oxaloacetate-decarboxylating) (NADP+) activity
GO:0016652molecular_functionoxidoreductase activity, acting on NADH or NADPH, NAD or NADP as acceptor
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9145.1.S1_at--1162--3451Chr05:5273461..5273485 (25 bp)
CAGGTGAGCGAGGACAACTTCGCCA
LOC_Os05g09440
Os.9145.1.S1_at--421--2891Chr05:5273377..5273401 (25 bp)
AAGGTCGCCGCCAAGGCGTACGAGC
LOC_Os05g09440
Os.9145.1.S1_at--242--4771Chr05:5273274..5273298 (25 bp)
GCTGCTACCGCTGATCGAGCACGAG
LOC_Os05g09440
Os.9145.1.S1_at--726--8851Chr05:5273263..5273287 (25 bp)
TGATCGAGCACGAGCCCACCGAGGA
LOC_Os05g09440
Os.9145.1.S1_at--937--10331Chr05:5273205..5273229 (25 bp)
TTTATTCAAATCTTGGCGCGAGCGT
LOC_Os05g09440
Os.9145.1.S1_at--323--4571Chr05:5273190..5273214 (25 bp)
GCGCGAGCGTTAGCTGCCATTAGAG
LOC_Os05g09440
Os.9145.1.S1_at--40--7452Chr11:3459164..3459230 (24 bp)
GTGTACCCATACATATACGTATACG
NONE
Os.9145.1.S1_at--657--6891Chr05:5273123..5273147 (25 bp)
GTATACGTGTACTGCATACATACTA
LOC_Os05g09440
Os.9145.1.S1_at--534--331Chr05:5273108..5273132 (25 bp)
ATACATACTAGAGCACCTGATGGTG
LOC_Os05g09440
Os.9145.1.S1_at--472--9391Chr05:5273073..5273097 (25 bp)
TCGATTCTTTTGACCGATTTGAAGT
LOC_Os05g09440
Os.9145.1.S1_at--831--1491Chr05:5273033..5273057 (25 bp)
AGCACTTACTTTTGAGTTTTCCACA
LOC_Os05g09440
Target Sequence 
CAGGTGAGCGAGGACAACTTCGCCAGGGGGCTCATCTTCCCGCCCTTCACCAACATCCGCAAGATCTCCGCACACATCGC
CGCCAAGGTCGCCGCCAAGGCGTACGAGCTCGGCCTCGCCAGCCGCNTCCCGCGCCCCGACGACCTCGTCAAGTACGCCG
AGAGCTGCATGTACACCCCGGCCTACCGCTGCTACCGCTGATCGAGCACGAGCCCACCGAGGAGGAAGACGATCGATCGA
ATTAAGCAATAAAATTTTTATTCAAATCTTGGCGCGAGCGTTAGCTGCCATTAGAGGGGTTTTCATTTTTAATTTTTTTT
GTGTACCCATACATATACGTATACGTGTACTGCATACATACTAGAGCACCTGATGGTGCTTGTCGTCGTCGATTCTTTTG
ACCGATTTGAAGTTTGGTAGGGTGTAATAGCACTTACTTTTGAGTTTTCCACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9145.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis