Browse Element(s) Details


Os.9193.1.S1_s_at

Description gb:L36313.1
DB_XREF= gi:538427
TID=Os.9193.1
CNT=34
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9193 (NCBI UniGene Cluster)
DEF=Oryza sativa ribosomal protein S16 mRNA, complete cds.
PROD=ribosomal protein S16
FL= gb:L36313.1 gb:AK059550.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0309011/1140S ribosomal protein S16, putative, expressed
LOC_Os11g0340011/1140S ribosomal protein S16, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g03050OsAffx.31559.1.S1_at11/1112+1146065..1147587No apical meristem protein, expressed
LOC_Os12g03060Os.37912.1.S1_at11/1112+1150632..1154729expressed protein
LOC_Os12g03070Os.10524.2.S1_at11/1112+1155635..1157563FHA domain containing protein, expressed
LOC_Os12g03070Os.10524.1.S1_x_at10/1112+1155635..1157563FHA domain containing protein, expressed
LOC_Os12g03080Os.50512.1.S1_at10/1112+1157566..1164277NB-ARC domain containing protein, expressed
LOC_Os12g03090Os.9193.1.S1_s_at11/1112+1168638..116946040S ribosomal protein S16, putative, expressed
LOC_Os12g03090Os.37737.1.S1_at11/1112+1168638..116946040S ribosomal protein S16, putative, expressed
LOC_Os12g03100Os.15794.1.S1_at11/1112+1171749..1174786secondary cell wall-related glycosyltransferase family 47, putative, expressed
LOC_Os12g03110Os.16784.1.S1_at8/1112+1179462..1180200ZF-HD protein dimerisation region containing protein
LOC_Os12g03120OsAffx.19462.1.S1_at11/1112+1182405..1182748hypothetical protein
LOC_Os12g03130Os.48443.1.S1_at11/1112+1188043..1190508CDC45-like protein, expressed
LOC_Os12g03140OsAffx.19463.1.S1_at7/1112+1191232..1192383hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0005843cellular_componentcytosolic small ribosomal subunit (sensu Eukaryota)
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9193.1.S1_s_at--294--1932Chr12:1169321..1169345 (25 bp)
ACGGTCCAGTGCTTCGGGCGCAAGA
LOC_Os12g03090
Os.9193.1.S1_s_at--242--8472Chr12:1169287..1169311 (25 bp)
TGGCCGTCTCCTACTGCAAGCCGGG
LOC_Os12g03090
Os.9193.1.S1_s_at--1161--3852Chr12:1169255..1169279 (25 bp)
CTGATCAAGGTGAACGGCGTCCCGA
LOC_Os12g03090
Os.9193.1.S1_s_at--1108--1932Chr12:1169242..1169266 (25 bp)
ACGGCGTCCCGATCGAGCTGATCAG
LOC_Os12g03090
Os.9193.1.S1_s_at--730--4052Chr12:1169233..1169257 (25 bp)
CGATCGAGCTGATCAGGCCGGAGAT
LOC_Os12g03090
Os.9193.1.S1_s_at--421--9632Chr12:1169221..1169245 (25 bp)
TCAGGCCGGAGATGCTCCGCCTCAA
LOC_Os12g03090
Os.9193.1.S1_s_at--985--952Chr12:1169155..1169179 (25 bp)
AGGACATCGACATGAGGATCCGCGT
LOC_Os12g03090
Os.9193.1.S1_s_at--1012--9352Chr12:1169149..1169173 (25 bp)
TCGACATGAGGATCCGCGTCCGCGG
LOC_Os12g03090
Os.9193.1.S1_s_at--303--5372Chr12:1169118..1169142 (25 bp)
GAAGACGTCGCAGATCTACGCGATC
LOC_Os12g03090
Os.9193.1.S1_s_at--838--4032Chr12:1168891..1168915 (25 bp)
CGATTCGGAGCGGTGTTCTCTTTTC
LOC_Os12g03090
Os.9193.1.S1_s_at--619--3672Chr12:1168872..1168896 (25 bp)
CTTTTCCACCCTATCAATGGAGCTA
LOC_Os12g03090
Target Sequence 
ACGGTCCAGTGCTTCGGGCGCAAGAAGACGGCGGTGGCCGTCTCCTACTGCAAGCCGGGGCGCGGGCTGATCAAGGTGAA
CGGCGTCCCGATCGAGCTGATCAGGCCGGAGATGCTCCGCCTCAAGGCGTTCGAGCCCATCCTGCTCGCGGGGAGGTCAC
GCTTCAAGGACATCGACATGAGGATCCGCGTCCGCGGCGGAGGGAAGACGTCGCAGATCTACGCGATCCGCCAGGCCATC
GCCAAGGCCCTCGTCGCCTACTACCAGAAGTACGTCGACGAGGCNTCCAAGAAGGAGGTNAAGGACATCTTTGCCCGCTA
TGACCGCACTCTACTCGTCGCCGACCCCAGGCGCTGCGAGCCCAAGAAGTTCGGTGGTCGCGGCGCCCGCGCCAGGTTCC
AGAAGTCGTACCGTTGAGCGCTCGCCGGATCGATTCGGAGCGGTGTTCTCTTTTCCACCCTATCAATGGAGCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9193.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis