Browse Element(s) Details


Os.9195.1.S1_at

Description gb:AK101393.1
DB_XREF= gi:32986602
TID=Os.9195.1
CNT=26
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.9195 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0501G01.5 (P0501G01.5), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033036N15, full insert sequence.
FL= gb:AK101393.1 gb:AK103381.1 gb:AK101548.1 gb:AK099577.1 gb:AK062141.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4337011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g43350Os.33558.1.S1_at11/111+25111457..25115097Protein kinase domain containing protein, expressed
LOC_Os01g43360Os.30361.1.S1_at11/111+25118981..25121220Myosin tail family protein, expressed
LOC_Os01g43360Os.30361.2.S1_x_at7/111+25118981..25121220Myosin tail family protein, expressed
LOC_Os01g43370Os.9195.1.S1_at11/111+25135378..25140247expressed protein
LOC_Os01g43380OsAffx.2225.1.S1_at11/111+25140513..25147244glycosyltransferase family protein 1, putative, expressed
LOC_Os01g43380Os.41226.1.S1_at6/111+25140513..25147244glycosyltransferase family protein 1, putative, expressed
LOC_Os01g43390Os.32068.1.S1_at11/111+25150846..25154987Uroporphyrinogen decarboxylase, chloroplast precursor, putative, expressed
LOC_Os01g43400Os.14096.1.S1_at8/111+25159888..25160988expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9195.1.S1_at--926--2871Chr01:25139661..25139685 (25 bp)
AAGGGAGATCCTCACGCGCAGGCAA
LOC_Os01g43370
Os.9195.1.S1_at--132--5791Chr01:25139691..25139715 (25 bp)
GACGACCAGTCTCATCTCGGTGGTG
LOC_Os01g43370
Os.9195.1.S1_at--224--7831Chr01:25139826..25139850 (25 bp)
GGTAACTCAAAGAATGGCGCCCTTC
LOC_Os01g43370
Os.9195.1.S1_at--40--8411Chr01:25139841..25139865 (25 bp)
GGCGCCCTTCTACCATGATGACATG
LOC_Os01g43370
Os.9195.1.S1_at--848--2231Chr01:25139886..25139910 (25 bp)
AAATTGGTGGCTCGCAGTTTTGATC
LOC_Os01g43370
Os.9195.1.S1_at--175--10871Chr01:25139986..25140010 (25 bp)
TTGGATTTGTTGTTATGGCCCTCTC
LOC_Os01g43370
Os.9195.1.S1_at--479--4191Chr01:25140004..25140028 (25 bp)
CCCTCTCCCGTGTGCTATATATAAA
LOC_Os01g43370
Os.9195.1.S1_at--153--10031Chr01:25140040..25140064 (25 bp)
TAGAGCGTGGAGTACCGGGCTTTCT
LOC_Os01g43370
Os.9195.1.S1_at--1014--3871Chr01:25140063..25140087 (25 bp)
CTGTCTTCCGTGCTATTGTAGTTGA
LOC_Os01g43370
Os.9195.1.S1_at--812--6651Chr01:25140092..25140116 (25 bp)
GTTGAACTGCCCTTCTGTCAGAATT
LOC_Os01g43370
Os.9195.1.S1_at--834--1111Chr01:25140154..25140178 (25 bp)
AGTGATTTGCCTTGCTGCTTTGCTG
LOC_Os01g43370
Target Sequence 
AAGGGAGATCCTCACGCGCAGGCAAGCAGCGACGACCAGTCTCATCTCGGTGGTGCTCATCCTCCTGCTGTACCGGCGAT
CACCTCGGATCGATTTTCTGAAGGAAGAGTGCATGGTGGTGGGCTACTGGCCTTACTTTCACGGGGTGGAAACCATGCGA
ATGCAGGTAACTCAAAGAATGGCGCCCTTCTACCATGATGACATGGGAGTGAGATTCTCTTCAAGAAATTGGTGGCTCGC
AGTTTTGATCTGTTTCCAAGAGTTTGTGCTGTGACGGACGGGAAAAACTAGTGTTTTCACATTTCACCAGATGTTCTTGT
GATGCTTGGATTTGTTGTTATGGCCCTCTCCCGTGTGCTATATATAAATAAGGAGCTCGTAGAGCGTGGAGTACCGGGCT
TTCTGTCTTCCGTGCTATTGTAGTTGATGTCGTTGAACTGCCCTTCTGTCAGAATTCATGTAATCTTGGTACTTCGTGTT
TATTTGTATTGTCAGTGATTTGCCTTGCTGCTTTGCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9195.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis