Browse Element(s) Details


Os.9206.1.S1_at

Description gb:AK061011.1
DB_XREF= gi:32971029
TID=Os.9206.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9206 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNBa0078O01.5), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-204-B02, full insert sequence.
FL= gb:AK061011.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3563011/11CBS domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g35570Os.46599.1.S1_at11/1110+18698524..18703936expressed protein
LOC_Os10g35580Os.6427.1.S1_at11/1110+18704280..18706702microtubule-associated EB1 family protein, putative, expressed
LOC_Os10g35604Os.31723.1.S1_at11/1110+18714919..18716653expressed protein
LOC_Os10g35630Os.9206.1.S1_at11/1110+18724059..18726439CBS domain-containing protein, putative, expressed
LOC_Os10g35640Os.46518.1.S1_at11/1110+18727281..18729777Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35640Os.46382.2.S1_x_at1/1110+18727281..18729777Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35650Os.53725.1.S1_x_at11/1110+18737158..18738407expressed protein
LOC_Os10g35650Os.53725.1.S1_at10/1110+18737158..18738407expressed protein
LOC_Os10g35650Os.46649.1.S1_x_at4/1110+18737158..18738407expressed protein
LOC_Os10g35650Os.46382.2.S1_x_at2/1110+18737158..18738407expressed protein
LOC_Os10g35650OsAffx.14302.1.S1_at1/1110+18737158..18738407expressed protein
LOC_Os10g35660OsAffx.7993.1.S1_at11/1110+18741606..18743550Myb-like DNA-binding domain containing protein
LOC_Os10g35660OsAffx.7993.1.S1_x_at11/1110+18741606..18743550Myb-like DNA-binding domain containing protein
LOC_Os10g35670Os.16128.2.S1_at11/1110+18749054..18751998RNA-binding protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9206.1.S1_at--433--8071Chr10:18725853..18725877 (25 bp)
GGAGCACATCCTTCGCGCGGTCAAG
LOC_Os10g35630
Os.9206.1.S1_at--935--9231Chr10:18725861..18725885 (25 bp)
TCCTTCGCGCGGTCAAGGCCGGGCT
LOC_Os10g35630
Os.9206.1.S1_at--85--1831Chr10:18725903..18725927 (25 bp)
ACGCCATGCTCGAGCTGGTGGAGAA
LOC_Os10g35630
Os.9206.1.S1_at--697--1791Chr10:18726116..18726140 (25 bp)
ACCGCGCCAGCTACCTGTGGGTGCT
LOC_Os10g35630
Os.9206.1.S1_at--56--5771Chr10:18726187..18726211 (25 bp)
GACGTGCTCACGGTGTTCCGCGAGC
LOC_Os10g35630
Os.9206.1.S1_at--182--1931Chr10:18726196..18726220 (25 bp)
ACGGTGTTCCGCGAGCAGCTGCAGT
LOC_Os10g35630
Os.9206.1.S1_at--542--6391Chr10:18726283..18726307 (25 bp)
GATCGATGGATCGTTGTGCATGCCT
LOC_Os10g35630
Os.9206.1.S1_at--350--6251Chr10:18726287..18726311 (25 bp)
GATGGATCGTTGTGCATGCCTGCAT
LOC_Os10g35630
Os.9206.1.S1_at--928--591Chr10:18726302..18726326 (25 bp)
ATGCCTGCATCCTTGTTCTGAAAAC
LOC_Os10g35630
Os.9206.1.S1_at--769--8531Chr10:18726331..18726355 (25 bp)
TGGAGTGTTTGTTTTGAAGCGTTTT
LOC_Os10g35630
Os.9206.1.S1_at--770--9491Chr10:18726382..18726406 (25 bp)
TCTGCCTTGGCCTGGTGCTGATGAA
LOC_Os10g35630
Target Sequence 
GGAGCACATCCTTCGCGCGGTCAAGGCCGGGCTGAAGAGCAAGGGCCTCGACGCCATGCTCGAGCTGGTGGAGAACGAGG
CGGTGTCCTCCTTCGCGTTCTCCTCCTCCTCCACCTCGTCGTCCTCCGACGACGAGGCCCACGGCCGCGCCGCGCGGCTG
AGGCGGCCGTCGTCGGGGAGCTACGGGCGCCGCTCGACGGAGGAGCCGGTGGTGTGCAGCCCGGCGAGCTCGCTGGTGGC
CGTGATGATGCAGGCGCTCGCCCACCGCGCCAGCTACCTGTGGGTGCTCGACGAGGACGACGACTGCCGCCTCGCCGGGA
TCGTCACGTTCGCCGACGTGCTCACGGTGTTCCGCGAGCAGCTGCAGTGAAGGCCGCTGCCGCGGCGACGCCAAGAAAGA
GTTCTTTTTTTTTTTNCTGTTGCGGCGATCGATCGATGGATCGTTGTGCATGCCTGCATCCTTGTTCTGAAAACATTTTG
GAGTGTTTGTTTTGAAGCGTTTTNGAACTCTGAACTCTGAAGTATTTGNCTCTGCCTTGGCCTGGTGCTGATGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9206.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis