Browse Element(s) Details


Os.9238.1.A1_a_at

Description gb:AB110177.1
DB_XREF= gi:32352151
TID=Os.9238.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.9238 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) mRNA for katanin, complete cds, clone: 13YPG038.
PROD=katanin
FL= gb:AB110177.1 gb:AK105474.1 gb:AK102585.1 gb:AK058626.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5526010/11ATPase, AAA family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g55240Os.21634.1.S1_at11/111+32121953..32124472Gibberellin 2-beta-dioxygenase, putative, expressed
LOC_Os01g55250OsAffx.11611.1.S1_at11/111+32126750..32127562hypothetical protein
LOC_Os01g55260Os.9238.1.A2_at11/111+32133810..32138711ATPase, AAA family protein, expressed
LOC_Os01g55260Os.9238.1.A1_a_at10/111+32133810..32138711ATPase, AAA family protein, expressed
LOC_Os01g55270Os.9238.2.S1_at11/111+32138193..32141441SGS domain containing protein, expressed
LOC_Os01g55280Os.26380.2.S1_x_at11/111+32142365..32143622expressed protein
LOC_Os01g55290Os.23673.1.S1_at11/111+32152814..32157027pentatricopeptide, putative, expressed
LOC_Os01g55290Os.42075.1.A1_x_at11/111+32152814..32157027pentatricopeptide, putative, expressed
LOC_Os01g55300Os.24887.2.S1_at11/111+32157151..32163542ImpB/MucB/SamB family protein, expressed
LOC_Os01g55300Os.24887.3.S1_x_at11/111+32157151..32163542ImpB/MucB/SamB family protein, expressed
LOC_Os01g55300Os.24887.1.S1_at11/111+32157151..32163542ImpB/MucB/SamB family protein, expressed
LOC_Os01g55310Os.32263.2.S1_x_at10/111+32163022..32166484HAD-superfamily hydrolase, subfamily IA, variant 3 containing protein, expressed
LOC_Os01g55310Os.32263.1.S1_at9/111+32163022..32166484HAD-superfamily hydrolase, subfamily IA, variant 3 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000226biological_processmicrotubule cytoskeleton organization and biogenesis
GO:0009825biological_processmultidimensional cell growth
GO:0009832biological_processcell wall biosynthesis (sensu Magnoliophyta)
GO:0010091biological_processtrichome branching (sensu Magnoliophyta)
GO:0019538biological_processprotein metabolism
GO:0008352cellular_componentkatanin
GO:0005524molecular_functionATP binding
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9238.1.A1_a_at--1033--5731Chr01:32137097..32137121 (25 bp)
GACGAACGACTTGGTATTTGTACTT
LOC_Os01g55260
Os.9238.1.A1_a_at--1058--10311Chr01:32137133..32137157 (25 bp)
TTTACCTTGGGAACTGGACGCAGCT
LOC_Os01g55260
Os.9238.1.A1_a_at--1081--9091NONE
TGCTCCGCCGGCTTGAGAAACGGAT
NONE
Os.9238.1.A1_a_at--97--6991Chr01:32137403..32137427 (25 bp)
GTACCTCTTCCTGAGGCTGAAGCAA
LOC_Os01g55260
Os.9238.1.A1_a_at--334--8631Chr01:32137441..32137465 (25 bp)
TGAGGAACTTTTGCCATCAACTACC
LOC_Os01g55260
Os.9238.1.A1_a_at--197--2011Chr01:32137515..32137539 (25 bp)
ACTCTGGTTCAGATATCCGTCTTGT
LOC_Os01g55260
Os.9238.1.A1_a_at--461--4431Chr01:32137553..32137577 (25 bp)
GCCATGCAACCACTAAGACGTCTTA
LOC_Os01g55260
Os.9238.1.A1_a_at--320--1391Chr01:32137568..32137592 (25 bp)
AGACGTCTTATGTCAGTTCTTGAAG
LOC_Os01g55260
Os.9238.1.A1_a_at--219--6631Chr01:32137756..32137780 (25 bp)
GTTGGTCCTCTCAAACCTGAAGACA
LOC_Os01g55260
Os.9238.1.A1_a_at--832--4971Chr01:32137815..32137839 (25 bp)
GCATCTCCATGCACATCGCTATGAG
LOC_Os01g55260
Os.9238.1.A1_a_at--258--9931Chr01:32137855..32137879 (25 bp)
TACGGAAGCCAGATCCTTAGTCAGG
LOC_Os01g55260
Target Sequence 
GACGAACGACTTGGTATTTGTACTTGCAGCAACAAATTTACCTTGGGAACTGGACGCAGCTATGCTCCGCCGGCTTGAGA
AACGGATTCTCGTACCTCTTCCTGAGGCTGAAGCAAGGCATGCTATGTTTGAGGAACTTTTGCCATCAACTACCTCAAAG
CTAGAGGTTCCATATGATACTTTAGTTGAGAAGACTGAAGGGTACTCTGGTTCAGATATCCGTCTTGTGTGCAAAGAAGC
TGCCATGCAACCACTAAGACGTCTTATGTCAGTTCTTGAAGCCAGAGATGAGCTGGTGCCTGAGGAAGAATTGCCCGAGG
TTGGTCCTCTCAAACCTGAAGACATCGAAGTTGCTTTGAGGAACACAAGGCCGTCTGCGCATCTCCATGCACATCGCTAT
GAGAAGTTTAACCAGGATTACGGAAGCCAGATCCTTAGTCAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9238.1.A1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis