Browse Element(s) Details


Os.9278.1.S1_s_at

Description gb:BI809076
DB_XREF= gi:15856264
DB_XREF=E009C11
CLONE=E009C11
TID=Os.9278.1
CNT=6
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.9278 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_567969.1 (A.thaliana) putative protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4567011/11Variant SH3 domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g45640OsAffx.14280.1.S1_at11/114+26776385..26777270hypothetical protein
LOC_Os04g45650Os.18449.1.S1_a_at11/114+26781712..26784533expressed protein
LOC_Os04g45670Os.9278.1.S1_s_at11/114+26796479..26800409Variant SH3 domain containing protein, expressed
LOC_Os04g45690Os.5890.1.S1_at11/114+26808184..26810412B-box zinc finger family protein, expressed
LOC_Os04g45700OsAffx.4101.1.S1_at11/114+26813732..26815736COBRA-like protein 6 precursor, putative, expressed
LOC_Os04g45710OsAffx.4102.1.S1_at9/114+26816354..26821348hypothetical protein
LOC_Os04g45720Os.18249.1.S1_at10/114+26824892..26829817aldehyde dehydrogenase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0012505cellular_componentendomembrane system
GO:0030276molecular_functionclathrin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9278.1.S1_s_at--648--5671Chr04:26797184..26797208 (25 bp)
GACATCTGTAGATTTCTTCCTAGGA
LOC_Os04g45670
Os.9278.1.S1_s_at--32--10091Chr04:26797059..26797188 (25 bp)
TAGGAGAGGCCCTTGATTCCTTCAA
LOC_Os04g45670
Os.9278.1.S1_s_at--98--6111Chr04:26797024..26797048 (25 bp)
GAGTCTGAGCTTAACTTGTCAGCTG
LOC_Os04g45670
Os.9278.1.S1_s_at--641--7251Chr04:26796843..26797009 (25 bp)
GTCCGGAAGATATCAACCAATGGTT
LOC_Os04g45670
Os.9278.1.S1_s_at--334--6251Chr04:26796788..26796812 (25 bp)
GATGGTTCCCACATGGTTATATCGA
LOC_Os04g45670
Os.9278.1.S1_s_at--269--6731Chr04:26796750..26796774 (25 bp)
GTTCTAGCTAGCAAGGTTCCACATA
LOC_Os04g45670
Os.9278.1.S1_s_at--1140--4351Chr04:26796732..26796756 (25 bp)
CCACATATTTTCTAGGAGTTCGAGG
LOC_Os04g45670
Os.9278.1.S1_s_at--729--291Chr04:26796643..26796667 (25 bp)
ATAGCTTCCACGTGATGCTTTCTGA
LOC_Os04g45670
Os.9278.1.S1_s_at--702--2051Chr04:26796558..26796582 (25 bp)
ACATTTCGGTAGACTGAATTGGCAC
LOC_Os04g45670
Os.9278.1.S1_s_at--627--5171Chr04:26796543..26796567 (25 bp)
GAATTGGCACTAGAGGGCCTTACAT
LOC_Os04g45670
Os.9278.1.S1_s_at--754--8431Chr04:26796528..26796552 (25 bp)
GGCCTTACATAGTTGAACCCTGGTT
LOC_Os04g45670
Target Sequence 
GACATCTGTAGATTTCTTCCTAGGAGAGGCCCTTGATTCCTTCAAGGCTGAAAGTGAGTCTGAGCTTAACTTGTCAGCTG
GAGACATTGTTATTGTCCGGAAGATATCAACCAATGGTTGGGCAGAAGGCGAATGCAAGGGAAAAGCAGGATGGTTCCCA
CATGGTTATATCGAAAGACGAGAGCGAGTTCTAGCTAGCAAGGTTCCACATATTTTCTAGGAGTTCGAGGATAAATGTGT
GTAGTTTTGATTTCAAATGTTGAANCAGTATATTCGTCTTCTTTGCCCCCACTTATAGCTTCCACGTGATGCTTTCTGAT
TCATGTGTATAGACTACACTTCGTGTTATTTACAAGTTTTGAATGGTATAGTTTGTAAGACATTTCGGTAGACTGAATTG
GCACTAGAGGGCCTTACATAGTTGAACCCTGGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9278.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis