Browse Element(s) Details


Os.9300.1.S1_at

Description gb:AK106046.1
DB_XREF= gi:32991255
TID=Os.9300.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.9300 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-206-E07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-206-E07, full insert sequence.
FL= gb:AK106046.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2971010/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g29676OsAffx.25718.1.S1_at2/115+17068353..17071320Zinc finger, C3HC4 type family protein
LOC_Os05g29680OsAffx.14871.1.S1_at11/115+17073457..17073885hypothetical protein
LOC_Os05g29690NANA5+17077033..17081239retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g29700OsAffx.11392.2.S1_x_at11/115+17087370..17091267retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g29700OsAffx.2719.1.S1_at5/115+17087370..17091267retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g29700OsAffx.11392.1.S1_at1/115+17087370..17091267retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g29710Os.9300.1.S1_at10/115+17094716..17096099Zinc finger, C3HC4 type family protein, expressed
LOC_Os05g29720OsAffx.19542.3.S1_x_at7/115+17104726..17110976retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g29720OsAffx.9949.1.S1_at1/115+17104726..17110976retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g29730OsAffx.14873.1.S1_at8/115+17113548..17114616retrotransposon, putative, centromere-specific
LOC_Os05g29740OsAffx.14874.1.S1_x_at11/115+17118659..17119389pectinesterase inhibitor domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0010200biological_processresponse to chitin
GO:0050832biological_processdefense response to fungi
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9300.1.S1_at--703--2911Chr05:17095508..17095532 (25 bp)
AAGGATGACGACTGCCCGGTGTGAC
LOC_Os05g29710
Os.9300.1.S1_at--1137--7791Chr05:17095584..17095608 (25 bp)
GGTCGAGCGCGCAATCGATCGTACG
LOC_Os05g29710
Os.9300.1.S1_at--520--6391Chr05:17095620..17095644 (25 bp)
GATCGAGAACGCGACAAGCATCTTT
LOC_Os05g29710
Os.9300.1.S1_at--867--5611Chr05:17095632..17095656 (25 bp)
GACAAGCATCTTTCGGCGTGCATCG
LOC_Os05g29710
Os.9300.1.S1_at--755--1451Chr05:17095713..17095737 (25 bp)
AGAAGACGCGAGGTTTTGCTTCCAC
LOC_Os05g29710
Os.9300.1.S1_at--617--9571Chr05:17095761..17095785 (25 bp)
TCTTCTCTCCAGCTTGTTCTTTAAT
LOC_Os05g29710
Os.9300.1.S1_at--934--10451Chr05:17095792..17095816 (25 bp)
TTACCTACCCTAGCTGCTTATATTG
LOC_Os05g29710
Os.9300.1.S1_at--20--6611Chr05:17095857..17095881 (25 bp)
GATTGGAGCTGTGTGCTGCTATATA
LOC_Os05g29710
Os.9300.1.S1_at--682--8031NONE
GGAGTGAAGAGCACTACCGCCAGAT
NONE
Os.9300.1.S1_at--891--1971Chr05:17096045..17096069 (25 bp)
ACTGCAGCCCGTTTTGATTTTTCAA
LOC_Os05g29710
Os.9300.1.S1_at--642--2531Chr05:17096073..17096097 (25 bp)
AACTAGCTTACTACGGATGATCCTG
LOC_Os05g29710
Target Sequence 
AAGGATGACGACTGCCCGGTGTGACGCCTCGCCGTCGCCGTCGCCGGGAGAGACGAGAACACAGCTATAGACGGAGGGTC
GAGCGCGCAATCGATCGTACGCCGGCCGGGGTGATCGAGAACGCGACAAGCATCTTTCGGCGTGCATCGCTGTCCAAGAT
GGAGGAAATCNAGAAAGGTTGGTGTCGGTGATGACTTATGAGTTGAGAAGACGCGAGGTTTTGCTTCCACTCGTACGGCC
GTTTTTGTTTTCTTCTTCTCTCCAGCTTGTTCTTTAATTTGTTGTTACCTACCCTAGCTGCTTATATTGTGTGTGATTAT
ATTGTGTNNCCTCATCTGTGTGTGTATATGATTGGAGCTGTGTGCTGCTATATAGTATAAGAGTTTTGTGTATAGAAATC
GATCGATCTGCTGCATGCATGCATATCGGATAGAATTAGTATGTACTTTGTAATAAAGGTTAATTACTCGTAGTTGAATG
CATGTAAGAAAGGAGTGAAGAGCACTACCGCCAGATCNCCTTATTACCCNGTTTGTAACTGCAGCCCGTTTTGATTTTTC
AAGCTAACTAGCTTACTACGGATGATCCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9300.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis