Browse Element(s) Details


OsAffx.14873.1.S1_at

Description tigr:9633.m02684
TID=OsAffx.14873.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g297308/11retrotransposon, putative, centromere-specific
LOC_Os12g198103/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g29700OsAffx.11392.2.S1_x_at11/115+17087370..17091267retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g29700OsAffx.2719.1.S1_at5/115+17087370..17091267retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g29700OsAffx.11392.1.S1_at1/115+17087370..17091267retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g29710Os.9300.1.S1_at10/115+17094716..17096099Zinc finger, C3HC4 type family protein, expressed
LOC_Os05g29720OsAffx.19542.3.S1_x_at7/115+17104726..17110976retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g29720OsAffx.9949.1.S1_at1/115+17104726..17110976retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g29730OsAffx.14873.1.S1_at8/115+17113548..17114616retrotransposon, putative, centromere-specific
LOC_Os05g29740OsAffx.14874.1.S1_x_at11/115+17118659..17119389pectinesterase inhibitor domain containing protein, expressed
LOC_Os05g29750OsAffx.4469.1.S1_x_at11/115+17121454..17123241expressed protein
LOC_Os05g29750OsAffx.4469.1.S1_at11/115+17121454..17123241expressed protein
LOC_Os05g29760Os.8611.1.S1_at10/115+17128613..17135790Ferrochelatase II, chloroplast precursor, putative, expressed
LOC_Os05g29770OsAffx.14875.1.S1_at11/115+17135843..17139216hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14873.1.S1_at--530--3931Chr05:17114117..17114519 (25 bp)
CGGCAGCGGCGAGGTACAACTTCAT
LOC_Os05g29730
OsAffx.14873.1.S1_at--735--8251Chr05:17114323..17114518 (25 bp)
GGCAGCGGCGAGGTACAACTTCATG
LOC_Os05g29730
OsAffx.14873.1.S1_at--329--5071Chr05:17114322..17114517 (25 bp)
GCAGCGGCGAGGTACAACTTCATGG
LOC_Os05g29730
OsAffx.14873.1.S1_at--302--3391Chr05:17114321..17114516 (25 bp)
CAGCGGCGAGGTACAACTTCATGGT
LOC_Os05g29730
OsAffx.14873.1.S1_at--998--7311Chr05:17114281..17114304 (24 bp)
GTGCATGTCAACTCAACAATCAGGA
LOC_Os05g29730
OsAffx.14873.1.S1_at--1153--4991NONE
GCATGTCAACTCAACAATCAGGAAC
NONE
OsAffx.14873.1.S1_at--405--8732Chr12:11549928..11550022 (24 bp)
TGTCAACTCAACAATCAGGAACGAT
LOC_Os12g19810
OsAffx.14873.1.S1_at--151--9712Chr12:11549926..11550021 (25 bp)
TCAACTCAACAATCAGGAACGATGG
LOC_Os12g19810
OsAffx.14873.1.S1_at--268--2532Chr12:11549924..11550019 (25 bp)
AACTCAACAATCAGGAACGATGGAG
LOC_Os12g19810
OsAffx.14873.1.S1_at--875--7931NONE
GGATTTCCGCGGGACGAGTGCCCTC
NONE
OsAffx.14873.1.S1_at--422--6251NONE
GATTTCCGCGGGACGAGTGCCCTCG
NONE
Target Sequence 
CGGCAGCGGCGAGGTACAACTTCATGGTCCTATTACTCGCGCTCGTGCATGTCAACTCAACAATCAGGAACGATGGAGAG
GATCCAAAGGGGAGAGGATTTCCGCGGGACGAGTGCCCTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14873.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis