Browse Element(s) Details


OsAffx.14875.1.S1_at

Description tigr:9633.m02690
TID=OsAffx.14875.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Mutator protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2977011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g29720OsAffx.19542.3.S1_x_at7/115+17104726..17110976retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g29720OsAffx.9949.1.S1_at1/115+17104726..17110976retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g29730OsAffx.14873.1.S1_at8/115+17113548..17114616retrotransposon, putative, centromere-specific
LOC_Os05g29740OsAffx.14874.1.S1_x_at11/115+17118659..17119389pectinesterase inhibitor domain containing protein, expressed
LOC_Os05g29750OsAffx.4469.1.S1_x_at11/115+17121454..17123241expressed protein
LOC_Os05g29750OsAffx.4469.1.S1_at11/115+17121454..17123241expressed protein
LOC_Os05g29760Os.8611.1.S1_at10/115+17128613..17135790Ferrochelatase II, chloroplast precursor, putative, expressed
LOC_Os05g29770OsAffx.14875.1.S1_at11/115+17135843..17139216hypothetical protein
LOC_Os05g29780OsAffx.20380.1.S1_x_at1/115+17149095..17152668retrotransposon protein, putative, unclassified
LOC_Os05g29780OsAffx.20380.2.S1_x_at1/115+17149095..17152668retrotransposon protein, putative, unclassified
LOC_Os05g29780OsAffx.22711.3.S1_x_at1/115+17149095..17152668retrotransposon protein, putative, unclassified
LOC_Os05g29780OsAffx.22711.4.A1_x_at1/115+17149095..17152668retrotransposon protein, putative, unclassified
LOC_Os05g29780OsAffx.20380.1.S1_at1/115+17149095..17152668retrotransposon protein, putative, unclassified
LOC_Os05g29780OsAffx.22711.1.S1_x_at1/115+17149095..17152668retrotransposon protein, putative, unclassified
LOC_Os05g29780OsAffx.22927.1.S1_x_at1/115+17149095..17152668retrotransposon protein, putative, unclassified
LOC_Os05g29790Os.53938.1.S1_at11/115+17156022..17159114Pectinesterase family protein, expressed
LOC_Os05g29800OsAffx.27076.1.S1_at11/115+17160992..17162364hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14875.1.S1_at--270--6291Chr05:17136421..17136445 (25 bp)
GATGATACTTTAGACCTCGACCACA
LOC_Os05g29770
OsAffx.14875.1.S1_at--649--3791Chr05:17136406..17136430 (25 bp)
CTCGACCACACACTATTTTATGATG
LOC_Os05g29770
OsAffx.14875.1.S1_at--364--2951Chr05:17136358..17136382 (25 bp)
AATGGAATCGTGAAAAGTCAGTCGG
LOC_Os05g29770
OsAffx.14875.1.S1_at--894--8671Chr05:17136245..17136269 (25 bp)
TGAGGCAAGGAGTCATGAGTATGAA
LOC_Os05g29770
OsAffx.14875.1.S1_at--930--2551Chr05:17136182..17136206 (25 bp)
AACTGAGACGCATGAGGCAAGGAGT
LOC_Os05g29770
OsAffx.14875.1.S1_at--930--2011Chr05:17136106..17136130 (25 bp)
ACTAAGGCGCATGAGGCAAGCAGTC
LOC_Os05g29770
OsAffx.14875.1.S1_at--597--1391Chr05:17136003..17136027 (25 bp)
AGACTTTAACATATGCTCAATTAGC
LOC_Os05g29770
OsAffx.14875.1.S1_at--335--7711Chr05:17135973..17135997 (25 bp)
GGGTGCGATACTTGCTTCAAGAAAA
LOC_Os05g29770
OsAffx.14875.1.S1_at--100--2711Chr05:17135949..17135973 (25 bp)
AAGCATATACTCGAGCGGAGGGTGA
LOC_Os05g29770
OsAffx.14875.1.S1_at--532--10771Chr05:17135902..17135926 (25 bp)
TTGAGTGTTGATTTGTTGGACCAAT
LOC_Os05g29770
OsAffx.14875.1.S1_at--329--6531Chr05:17135893..17135917 (25 bp)
GATTTGTTGGACCAATATTCAGAGG
LOC_Os05g29770
Target Sequence 
GATGATACTTTAGACCTCGACCACACACTATTTTATGATGAACCAAACTACAAAGCATTTGATAATGGAATCGTGAAAAG
TCAGTCGGTTAGGTCTTTGATAGTTGAGGAAGTCATAGAATCTCAAGGGGTGGAGGTTGATGTGAAGATGCAAAAGATGG
AAGCAGTTGAGGCGAATGAGGCAAGGAGTCATGAGTATGAAGGGGTGAAGGAGGAAGCAACTGAGACGCATGAGGCAAGG
AGTCAGGAATCTAAAGGGGTGGAGGTAAATGTGGAGTTGCAGAAGGAGGAAGCAACTAAGGCGCATGAGGCAAGCAGTCA
GGCAGTTCCGACAATTGGAAATCATGTCGAAGATGATAATCAAGAGGGAGATGGATCGATGGGGAGAGGTGGAGAAGAGA
CTTTAACATATGCTCAATTAGCATCCGGGGTGCGATACTTGCTTCAAGAAAAAGCATATACTCGAGCGGAGGGTGAGGAG
ACTTTGTTGAACAATGGATTGAGTGTTGATTTGTTGGACCAATATTCAGAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14875.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis