Browse Element(s) Details


OsAffx.27076.1.S1_at

Description tigr:9633.m02693
TID=OsAffx.27076.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2980011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g29770OsAffx.14875.1.S1_at11/115+17135843..17139216hypothetical protein
LOC_Os05g29780OsAffx.20380.1.S1_x_at1/115+17149095..17152668retrotransposon protein, putative, unclassified
LOC_Os05g29780OsAffx.20380.2.S1_x_at1/115+17149095..17152668retrotransposon protein, putative, unclassified
LOC_Os05g29780OsAffx.22711.3.S1_x_at1/115+17149095..17152668retrotransposon protein, putative, unclassified
LOC_Os05g29780OsAffx.22711.4.A1_x_at1/115+17149095..17152668retrotransposon protein, putative, unclassified
LOC_Os05g29780OsAffx.20380.1.S1_at1/115+17149095..17152668retrotransposon protein, putative, unclassified
LOC_Os05g29780OsAffx.22711.1.S1_x_at1/115+17149095..17152668retrotransposon protein, putative, unclassified
LOC_Os05g29780OsAffx.22927.1.S1_x_at1/115+17149095..17152668retrotransposon protein, putative, unclassified
LOC_Os05g29790Os.53938.1.S1_at11/115+17156022..17159114Pectinesterase family protein, expressed
LOC_Os05g29800OsAffx.27076.1.S1_at11/115+17160992..17162364hypothetical protein
LOC_Os05g29810Os.4893.1.S1_at11/115+17166002..17167249AP2 domain containing protein, expressed
LOC_Os05g29820Os.45976.1.S1_x_at1/115+17178789..17182432transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g29829NANA5+17186085..17186294hypothetical protein
LOC_Os05g29840OsAffx.31869.4.S1_x_at10/115+17187251..17188009retrotransposon protein, putative, unclassified
LOC_Os05g29840OsAffx.31869.4.S1_at9/115+17187251..17188009retrotransposon protein, putative, unclassified
LOC_Os05g29840OsAffx.31869.3.S1_x_at8/115+17187251..17188009retrotransposon protein, putative, unclassified
LOC_Os05g29840OsAffx.31869.3.S1_s_at4/115+17187251..17188009retrotransposon protein, putative, unclassified
LOC_Os05g29840OsAffx.31869.3.S1_at3/115+17187251..17188009retrotransposon protein, putative, unclassified
LOC_Os05g29840OsAffx.31869.5.S1_x_at2/115+17187251..17188009retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27076.1.S1_at--1080--5111Chr05:17161762..17161786 (25 bp)
GCACAGCGTTGCTCATGTAGTCATA
LOC_Os05g29800
OsAffx.27076.1.S1_at--335--5871Chr05:17161718..17161742 (25 bp)
GAGCCATTGCTCATGTACTCGTAGA
LOC_Os05g29800
OsAffx.27076.1.S1_at--1058--891Chr05:17161655..17161679 (25 bp)
AGGCGCACCAGGTTGCAGTGGCTCT
LOC_Os05g29800
OsAffx.27076.1.S1_at--560--10731Chr05:17161643..17161667 (25 bp)
TTGCAGTGGCTCTTCCGCACGATGG
LOC_Os05g29800
OsAffx.27076.1.S1_at--520--4691Chr05:17161231..17161521 (25 bp)
GCGGAAGCTCGTGTAGCTGCTGCCT
LOC_Os05g29800
OsAffx.27076.1.S1_at--478--3831Chr05:17161208..17161232 (25 bp)
CTGCGCGGGCTTGAGTAGCTGCACT
LOC_Os05g29800
OsAffx.27076.1.S1_at--266--10011Chr05:17161193..17161217 (25 bp)
TAGCTGCACTGACCTTCGTCAAGTT
LOC_Os05g29800
OsAffx.27076.1.S1_at--253--7092Chr01:42860089..42860113 (25 bp)
GTCAAGTTCTTGGTGTAGCTGCCAT
NONE
OsAffx.27076.1.S1_at--1115--8611Chr05:17161166..17161190 (25 bp)
TGGTGTAGCTGCCATTGTTGCTGAC
LOC_Os05g29800
OsAffx.27076.1.S1_at--242--8192Chr01:42860165..42860189 (25 bp)
GGAAGCCTATCTGGAACGTGCCGGT
NONE
OsAffx.27076.1.S1_at--973--5451Chr05:17161087..17161111 (25 bp)
GAACGTGCCGGTGTACTGACATGTG
LOC_Os05g29800
Target Sequence 
GCACAGCGTTGCTCATGTAGTCATAGATGAGGAAGTTGGCGAGGGAGCCATTGCTCATGTACTCGTAGATGAGGAGGCGG
TTGGCGCCCTCGTGGCAGCAGCTGAGCAGGCGCACCAGGTTGCAGTGGCTCTTCCGCACGATGGCGCGCACCTCTCTCTG
GAACTCCCACTCGCCGTCCTCCACCAGCTTCTCCAACCACTTCACGGCAACCGCCCTCTCGCCGCCGTGCCGCAGTGTCC
CCTTGAACACCGTGCCAAACGCGGCGCGGAAGCTCGTGTAGCTGCTGCCTGCGCGGGCTTGAGTAGCTGCACTGACCTTC
GTCAAGTTCTTGGTGTAGCTGCCATTGTTGCTGACGAGGTAGAGCACGCCGCTGGCATCGAGGCGCAAGGTGATGGGGAA
GCCTATCTGGAACGTGCCGGTGTACTGACATGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27076.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis