Browse Element(s) Details


OsAffx.4469.1.S1_x_at

Description tigr:9633.m02686
TID=OsAffx.4469.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Cytochrome P450
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2975011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g29720OsAffx.19542.3.S1_x_at7/115+17104726..17110976retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g29720OsAffx.9949.1.S1_at1/115+17104726..17110976retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g29730OsAffx.14873.1.S1_at8/115+17113548..17114616retrotransposon, putative, centromere-specific
LOC_Os05g29740OsAffx.14874.1.S1_x_at11/115+17118659..17119389pectinesterase inhibitor domain containing protein, expressed
LOC_Os05g29750OsAffx.4469.1.S1_x_at11/115+17121454..17123241expressed protein
LOC_Os05g29750OsAffx.4469.1.S1_at11/115+17121454..17123241expressed protein
LOC_Os05g29760Os.8611.1.S1_at10/115+17128613..17135790Ferrochelatase II, chloroplast precursor, putative, expressed
LOC_Os05g29770OsAffx.14875.1.S1_at11/115+17135843..17139216hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4469.1.S1_x_at--1101--2091Chr05:17122564..17122588 (25 bp)
ACATGCGCAGGCTGCAGGACGAGAT
LOC_Os05g29750
OsAffx.4469.1.S1_x_at--997--1891Chr05:17122627..17122651 (25 bp)
ACGTCGACAAGCTGCCGTACCTGAG
LOC_Os05g29750
OsAffx.4469.1.S1_x_at--10--9191Chr05:17122639..17122663 (25 bp)
TGCCGTACCTGAGGGCCGCGCTGAA
LOC_Os05g29750
OsAffx.4469.1.S1_x_at--135--1391Chr05:17122813..17122837 (25 bp)
AGACCGCCGAGGAGTTCATGCCGGA
LOC_Os05g29750
OsAffx.4469.1.S1_x_at--216--4211Chr05:17122870..17122894 (25 bp)
CCGCCGCGGCGGACTACAAGGTGCA
LOC_Os05g29750
OsAffx.4469.1.S1_x_at--357--3951Chr05:17122879..17122903 (25 bp)
CGGACTACAAGGTGCAGGGCTTCGA
LOC_Os05g29750
OsAffx.4469.1.S1_x_at--554--9051Chr05:17122891..17122915 (25 bp)
TGCAGGGCTTCGAGATGCTGCCGTT
LOC_Os05g29750
OsAffx.4469.1.S1_x_at--120--3991Chr05:17122939..17122963 (25 bp)
CGGGTGTCACGTTCGGCATGGCCAC
LOC_Os05g29750
OsAffx.4469.1.S1_x_at--268--7551Chr05:17122977..17123001 (25 bp)
GTGGCGAGCTTGCTGTACCATTTCG
LOC_Os05g29750
OsAffx.4469.1.S1_x_at--15--8111Chr05:17123044..17123068 (25 bp)
GGACGCCATTGCTGGACATGAGCGA
LOC_Os05g29750
OsAffx.4469.1.S1_x_at--1133--8891Chr05:17123062..17123086 (25 bp)
TGAGCGAGACCAGTGGGATCTCCAT
LOC_Os05g29750
Target Sequence 
ACATGCGCAGGCTGCAGGACGAGATTCGGGCGGTGGTCGGCGGCGGGCGCGTCACGGAGGACCACGTCGACAAGCTGCCG
TACCTGAGGGCCGCGCTGAAGGAGGCGCTCCGGCTGCACGCGCCGCTGCCGCTGCTCGTGGCGCGGGAGACGGTGGCGGA
CACCGAGATCATGGGGTACCACGTCGCCGCGCGCACGCGGGTGGTGATCAACGGGTGGGCCATCGGCCGCGACACGGCGG
TGTGGGGGGAGACCGCCGAGGAGTTCATGCCGGAGAGGTTCTTGGCCGGCGGCAATGGAGGCGGCGCCGCCGCGGCGGAC
TACAAGGTGCAGGGCTTCGAGATGCTGCCGTTCGGTGGTGGGAGGAGGGGGTGCCCGGGTGTCACGTTCGGCATGGCCAC
CGTGGAGATGGCCGTGGCGAGCTTGCTGTACCATTTCGACTGGGAGGCGGCGGCGGCCGACGGGAAGGGTGGGCGGGAGG
GGACGCCATTGCTGGACATGAGCGAGACCAGTGGGATCTCCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4469.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis