Browse Element(s) Details


OsAffx.14874.1.S1_x_at

Description tigr:9633.m02685
TID=OsAffx.14874.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2974011/11pectinesterase inhibitor domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g29710Os.9300.1.S1_at10/115+17094716..17096099Zinc finger, C3HC4 type family protein, expressed
LOC_Os05g29720OsAffx.19542.3.S1_x_at7/115+17104726..17110976retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g29720OsAffx.9949.1.S1_at1/115+17104726..17110976retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g29730OsAffx.14873.1.S1_at8/115+17113548..17114616retrotransposon, putative, centromere-specific
LOC_Os05g29740OsAffx.14874.1.S1_x_at11/115+17118659..17119389pectinesterase inhibitor domain containing protein, expressed
LOC_Os05g29750OsAffx.4469.1.S1_x_at11/115+17121454..17123241expressed protein
LOC_Os05g29750OsAffx.4469.1.S1_at11/115+17121454..17123241expressed protein
LOC_Os05g29760Os.8611.1.S1_at10/115+17128613..17135790Ferrochelatase II, chloroplast precursor, putative, expressed
LOC_Os05g29770OsAffx.14875.1.S1_at11/115+17135843..17139216hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14874.1.S1_x_at--578--3931Chr05:17118797..17118821 (25 bp)
CGGCGTCGTCTTCGGTGCTCGTCGT
LOC_Os05g29740
OsAffx.14874.1.S1_x_at--320--1532Chr05:17118916..17118940 (25 bp)
AGCATCGCGGAGACTTGCAGCTTCG
LOC_Os05g29740
OsAffx.14874.1.S1_x_at--105--4691Chr05:17118922..17118946 (25 bp)
GCGGAGACTTGCAGCTTCGTCGACG
LOC_Os05g29740
OsAffx.14874.1.S1_x_at--716--4091Chr05:17118942..17118966 (25 bp)
CGACGACCACAAGCTGTGCGAGGAG
LOC_Os05g29740
OsAffx.14874.1.S1_x_at--899--5771Chr05:17119120..17119144 (25 bp)
GACGACGCGGATCACCGGTGCGTGG
LOC_Os05g29740
OsAffx.14874.1.S1_x_at--370--391Chr05:17119130..17119154 (25 bp)
ATCACCGGTGCGTGGGCGACTGCAC
LOC_Os05g29740
OsAffx.14874.1.S1_x_at--715--1972Chr05:17119148..17119172 (25 bp)
ACTGCACGGTCAGGTACGACAGGGC
LOC_Os05g29740
OsAffx.14874.1.S1_x_at--647--1071Chr05:17119168..17119192 (25 bp)
AGGGCGGTGGCGTACCTCGGCGACG
LOC_Os05g29740
OsAffx.14874.1.S1_x_at--709--5151Chr05:17119319..17119343 (25 bp)
GCAACGGAGCCGTCGAGCGCCTCTG
LOC_Os05g29740
OsAffx.14874.1.S1_x_at--576--1931Chr05:17119322..17119346 (25 bp)
ACGGAGCCGTCGAGCGCCTCTGCAA
LOC_Os05g29740
OsAffx.14874.1.S1_x_at--873--5871Chr05:17119333..17119357 (25 bp)
GAGCGCCTCTGCAACGTCGCCATGG
LOC_Os05g29740
Target Sequence 
CGGCGTCGTCTTCGGTGCTCGTCGTCGTCGCCGCCTGCCTCGCGGCCGCCCTCGTCTGCCTCGCCGCCAACGTCGCGCCG
GCGTCGTGCGCGCGCGCCACCGCCGCCCTGCCGCACGCCAGCATCGCGGAGACTTGCAGCTTCGTCGACGACCACAAGCT
GTGCGAGGAGTCGCTGTCGTCGCTGCCGCTGACGGCGAGGGCGGCGGCGGACGCGCGCGTGCTGGCGCGCGCCGCGGTGC
TGCTGGCGAGGCAGAACGCGACGGCGACGGCGGCGTACCTGTCCCACCTCCACGCCGCCGCCGCCGCGGCAGCCGACGAC
GGCGACGACGCGGATCACCGGTGCGTGGGCGACTGCACGGTCAGGTACGACAGGGCGGTGGCGTACCTCGGCGACGCGGC
GGCGGCGCTGGACGCCGGCGAGTTCGACGAGGCGGAGCTGCTGGTCGGCGCCGGGCGGACGGAGGCGGAGCTGTGCCAGA
AGGGGTGCGAGCACGCGCGGCTGCCGGCGCTGCTCGCCGCGCGCAACGGAGCCGTCGAGCGCCTCTGCAACGTCGCCATG
G

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14874.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis