Browse Element(s) Details


Os.8611.1.S1_at

Description gb:CB677642
DB_XREF= gi:29681367
DB_XREF=OSJNEe14M23.r
CLONE=OSJNEe14M23
TID=Os.8611.1
CNT=41
FEA=FLmRNA
TIER=Stack
STK=7
UG=Os.8611 (NCBI UniGene Cluster)
UG_TITLE=MRNA for ferrochelatase, partial cds
FL= gb:AK062212.1 gb:AK073873.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2976010/11Ferrochelatase II, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g29720OsAffx.19542.3.S1_x_at7/115+17104726..17110976retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g29720OsAffx.9949.1.S1_at1/115+17104726..17110976retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g29730OsAffx.14873.1.S1_at8/115+17113548..17114616retrotransposon, putative, centromere-specific
LOC_Os05g29740OsAffx.14874.1.S1_x_at11/115+17118659..17119389pectinesterase inhibitor domain containing protein, expressed
LOC_Os05g29750OsAffx.4469.1.S1_x_at11/115+17121454..17123241expressed protein
LOC_Os05g29750OsAffx.4469.1.S1_at11/115+17121454..17123241expressed protein
LOC_Os05g29760Os.8611.1.S1_at10/115+17128613..17135790Ferrochelatase II, chloroplast precursor, putative, expressed
LOC_Os05g29770OsAffx.14875.1.S1_at11/115+17135843..17139216hypothetical protein
LOC_Os05g29780OsAffx.20380.1.S1_x_at1/115+17149095..17152668retrotransposon protein, putative, unclassified
LOC_Os05g29780OsAffx.20380.2.S1_x_at1/115+17149095..17152668retrotransposon protein, putative, unclassified
LOC_Os05g29780OsAffx.22711.3.S1_x_at1/115+17149095..17152668retrotransposon protein, putative, unclassified
LOC_Os05g29780OsAffx.22711.4.A1_x_at1/115+17149095..17152668retrotransposon protein, putative, unclassified
LOC_Os05g29780OsAffx.20380.1.S1_at1/115+17149095..17152668retrotransposon protein, putative, unclassified
LOC_Os05g29780OsAffx.22711.1.S1_x_at1/115+17149095..17152668retrotransposon protein, putative, unclassified
LOC_Os05g29780OsAffx.22927.1.S1_x_at1/115+17149095..17152668retrotransposon protein, putative, unclassified
LOC_Os05g29790Os.53938.1.S1_at11/115+17156022..17159114Pectinesterase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006783biological_processheme biosynthesis
GO:0004325molecular_functionferrochelatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8611.1.S1_at--27--10011Chr05:17133613..17133813 (25 bp)
TAGCTGTTCCCATCAGTTTTGTCAG
LOC_Os05g29760
Os.8611.1.S1_at--762--6051Chr05:17133857..17133881 (25 bp)
GAGTTGGCTTTAGAATCCGGCATCA
LOC_Os05g29760
Os.8611.1.S1_at--1051--5771Chr05:17133891..17133915 (25 bp)
GACGAGTTCCTGCATTAGGTTGTGA
LOC_Os05g29760
Os.8611.1.S1_at--1058--6731Chr05:17133922..17133946 (25 bp)
GTTCATAACAGATCTTGCCGATGCT
LOC_Os05g29760
Os.8611.1.S1_at--145--5571Chr05:17133953..17133977 (25 bp)
GAAAGCTTGCCTTATGTTGGTGCTA
LOC_Os05g29760
Os.8611.1.S1_at--293--2371NONE
AAACCTTGAAGCTCGACAGCCACTG
NONE
Os.8611.1.S1_at--140--2171Chr05:17134509..17134532 (24 bp)
ACAGCCACTGGTGCCACTTGGGAGT
LOC_Os05g29760
Os.8611.1.S1_at--940--5351Chr05:17134536..17134560 (25 bp)
GAAGAACTGCTAGCGGCGTACGACT
LOC_Os05g29760
Os.8611.1.S1_at--295--1391Chr05:17134624..17134648 (25 bp)
AGACCTGGAATGGACGGGCTGCTAT
LOC_Os05g29760
Os.8611.1.S1_at--390--8491Chr05:17134660..17134684 (25 bp)
TGGCTCTCCTAGTGCTGGAGGTGAC
LOC_Os05g29760
Os.8611.1.S1_at--74--3771Chr05:17134747..17134771 (25 bp)
CTCTTCAGGTCAGCTCTTTTTGAGG
LOC_Os05g29760
Target Sequence 
TAGCTGTTCCCATCAGTTTTGTCAGTGAACATATTGAAACTTTGGAAGAAATCGATGTAGAATACAAGGGAGTTGGCTTT
AGAATCCGGCATCAAGCACTGGGGACGAGTTCCTGCATTAGGTTGTGAACCCACGTTCATAACAGATCTTGCCGATGCTG
TTATTGAAAGCTTGCCTTATGTTGGTGCTATGGCAGTTTCAAACCTTGAAGCTCGACAGCCACTGGTGCCACTTGGGAGT
GTGGAAGAACTGCTAGCGGCGTACGACTCGAAACGCGACGAGCTGCCCCCTCCAGTGACTGTATGGGAGTGGGGCTGGAC
GAAGAGCGCGGAGACCTGGAATGGACGGGCTGCTATGCTGGCCGTGCTGGCTCTCCTAGTGCTGGAGGTGACAACCGGAG
AAGGGTTCTTGCACCAGTGGGGCATCCTGCCTTTGTTCCACTGAGCCGATGGCCCTCTTCAGGTCAGCTCTTTTTGAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8611.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis