Browse Element(s) Details


Os.9301.1.S1_x_at

Description gb:AK103189.1
DB_XREF= gi:32988398
TID=Os.9301.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9301 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033121M18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033121M18, full insert sequence.
FL= gb:AK103189.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g286708/11ripening induced protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g28620NANA8+17354449..17354676retrotransposon protein, putative, unclassified
LOC_Os08g28630OsAffx.22699.1.S1_x_at2/118+17357764..17363983retrotransposon protein, putative, unclassified
LOC_Os08g28630OsAffx.16111.1.S1_at1/118+17357764..17363983retrotransposon protein, putative, unclassified
LOC_Os08g28640OsAffx.17213.1.S1_x_at11/118+17364476..17366727hypothetical protein
LOC_Os08g28650OsAffx.29404.1.S1_at9/118+17367614..17369285hypothetical protein
LOC_Os08g28660OsAffx.5968.1.S1_at11/118+17373312..17374386hypothetical protein
LOC_Os08g28670Os.51490.1.S1_at11/118+17377243..17378834ripening induced protein, putative, expressed
LOC_Os08g28670Os.9301.1.S1_at10/118+17377243..17378834ripening induced protein, putative, expressed
LOC_Os08g28670Os.9301.1.S1_x_at8/118+17377243..17378834ripening induced protein, putative, expressed
LOC_Os08g28680Os.10883.1.S1_at11/118+17380193..17383258Ubiquitin-conjugating enzyme E2 M, putative, expressed
LOC_Os08g28690Os.9391.1.S1_at11/118+17385534..17390235expressed protein
LOC_Os08g28690Os.48160.1.A1_s_at11/118+17385534..17390235expressed protein
LOC_Os08g28690Os.9391.1.S2_at11/118+17385534..17390235expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9301.1.S1_x_at--1088--2911Chr08:17378605..17378629 (25 bp)
AAGGAGATGGCAGCCCTGGCAGCCT
LOC_Os08g28670
Os.9301.1.S1_x_at--1108--8491Chr08:17378589..17378613 (25 bp)
TGGCAGCCTCAGGATCTTCAAGCTA
LOC_Os08g28670
Os.9301.1.S1_x_at--1089--7951Chr08:17378582..17378602 (21 bp)
GGATCTTCAAGCTAGGACCTGCACT
LOC_Os08g28670
Os.9301.1.S1_x_at--738--3311Chr08:17378404..17378428 (25 bp)
CACTTTGTCAAGGAATCTGTTCAGA
LOC_Os08g28670
Os.9301.1.S1_x_at--55--3971Chr08:17378356..17378380 (25 bp)
CGGTCCTTCGGCTATGAAGTGGTCA
LOC_Os08g28670
Os.9301.1.S1_x_at--963--5291Chr08:17378237..17378261 (25 bp)
GAAGGCTGAGTTTGAGCCCATCACC
LOC_Os08g28670
Os.9301.1.S1_x_at--1123--2891NONE
AAGGATGCCGCCCTCGGGTTTCTCA
NONE
Os.9301.1.S1_x_at--862--4531NONE
GCCCTCGGGTTTCTCAAATTGTTTG
NONE
Os.9301.1.S1_x_at--51--351Chr08:17377980..17378004 (25 bp)
ATAACCCTGTACTAATTACTCTAGA
LOC_Os08g28670
Os.9301.1.S1_x_at--344--2911NONE
AAGGAGTCCATATAAGCTTCTTGTA
NONE
Os.9301.1.S1_x_at--727--1551Chr08:17377935..17377958 (24 bp)
AGCTTCTTGTATATGTATGGCTGAA
LOC_Os08g28670
Target Sequence 
AAGGAGATGGCAGCCCTGGCAGCCTCAGGATCTTCAAGCTAGGACCTGCACTNCATCACTTTGTCAAGGAATCTGTTCAG
AAGGTTGAGAAGGTCGAGACNGGCCGGTCCTTCGGCTATGAAGTGGTCAGNGGTGAGCTGAANGAGGTCTANGATCCCTA
CCATGTCACCTTCTCCTTCGNCCCNGTCCCGGNGAAGGAAGGCGAGCAGTGCGTCNCTNGGTGGAAGGCTGAGTTTGAGC
CCATCACCCCCACNTNCCCGNCACCNGAGAAGGCCAAGGATGCCGCCCTCGGGTTTCTCAAATTGTTTGAGACTTGCGAN
GCCNCTAACTAGTAAAATGACAAAANCTGTNGTCATCNTAATGAAGATAAGTATGAAGAAACCTATGGGTAGGACAGNGT
ATAGAGTNCTAGGNCTTGACNTGTGNAATANCTGCCTAGTACCTNTCTGGAANGTGTNGNNTNANGCCAAGTGCTATGNA
ATGTAATAACCCTGTACTAATTACTCTAGACCCAAAAAGGAGTCCATATAAGCTTCTTGTATATGTATGGCTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9301.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis