Browse Element(s) Details


Os.9386.1.S1_at

Description gb:AK100904.1
DB_XREF= gi:32986113
TID=Os.9386.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9386 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023132A08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023132A08, full insert sequence.
FL= gb:AK100904.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g128508/11RNA recognition motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g12840OsAffx.24217.1.S1_at11/112+6769015..6778174DEAD/DEAH box helicase family protein
LOC_Os02g12850Os.9386.2.S1_x_at11/112+6784175..6788332RNA recognition motif family protein, expressed
LOC_Os02g12850Os.9386.1.S1_at8/112+6784175..6788332RNA recognition motif family protein, expressed
LOC_Os02g12850OsAffx.30412.1.S1_at1/112+6784175..6788332RNA recognition motif family protein, expressed
LOC_Os02g12860OsAffx.2587.1.S1_at11/112+6788990..6789840hypothetical protein
LOC_Os02g12870Os.25870.2.S1_a_at10/112+6791043..6795073membrane protein, putative, expressed
LOC_Os02g12880OsAffx.24218.1.S1_at11/112+6798696..6802474EF hand family protein, expressed
LOC_Os02g12880Os.9096.2.S1_a_at11/112+6798696..6802474EF hand family protein, expressed
LOC_Os02g12890Os.50611.1.S1_x_at11/112+6802706..6805314Cytochrome P450 family protein, expressed
LOC_Os02g12900Os.57132.1.S1_at11/112+6810648..6814112Cysteine synthase, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9386.1.S1_at--990--51Chr02:6784292..6784316 (25 bp)
ATTGACCTTGCTGCTATAATCTCTG
LOC_Os02g12850
Os.9386.1.S1_at--61--471NONE
ATCTCTGTATATCATTGTCCTGCGC
NONE
Os.9386.1.S1_at--759--10191NONE
TATATCATTGTCCTGCGCTCTGTAT
NONE
Os.9386.1.S1_at--194--51NONE
ATTGTCCTGCGCTCTGTATTTCTTA
NONE
Os.9386.1.S1_at--528--9151Chr02:6784254..6784278 (25 bp)
TGCGCTCTGTATTTCTTACGGCAGT
LOC_Os02g12850
Os.9386.1.S1_at--516--4811Chr02:6784251..6784275 (25 bp)
GCTCTGTATTTCTTACGGCAGTGAA
LOC_Os02g12850
Os.9386.1.S1_at--107--3951Chr02:6784236..6784260 (25 bp)
CGGCAGTGAAGAATGCATGGTCCAC
LOC_Os02g12850
Os.9386.1.S1_at--328--5271Chr02:6784226..6784250 (25 bp)
GAATGCATGGTCCACTGCAATACAT
LOC_Os02g12850
Os.9386.1.S1_at--482--7791Chr02:6784218..6784242 (25 bp)
GGTCCACTGCAATACATATGTCCGT
LOC_Os02g12850
Os.9386.1.S1_at--1039--1971Chr02:6784213..6784237 (25 bp)
ACTGCAATACATATGTCCGTCTGAT
LOC_Os02g12850
Os.9386.1.S1_at--1086--9871Chr02:6784206..6784230 (25 bp)
TACATATGTCCGTCTGATTATACTC
LOC_Os02g12850
Target Sequence 
ATTGACCTTGCTGCTATAATCTCTGTATATCATTGTCCTGCGCTCTGTATTTCTTACGGCAGTGAAGAATGCATGGTCCA
CTGCAATACATATGTCCGTCTGATTATACTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9386.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis