Browse Element(s) Details


Os.9391.1.S2_at

Description gb:AK072407.1
DB_XREF= gi:32982430
TID=Os.9391.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9391 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-119-C07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023081K18, full insert sequence.
FL= gb:AK106935.1 gb:AK072407.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2869011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g28630OsAffx.22699.1.S1_x_at2/118+17357764..17363983retrotransposon protein, putative, unclassified
LOC_Os08g28630OsAffx.16111.1.S1_at1/118+17357764..17363983retrotransposon protein, putative, unclassified
LOC_Os08g28640OsAffx.17213.1.S1_x_at11/118+17364476..17366727hypothetical protein
LOC_Os08g28650OsAffx.29404.1.S1_at9/118+17367614..17369285hypothetical protein
LOC_Os08g28660OsAffx.5968.1.S1_at11/118+17373312..17374386hypothetical protein
LOC_Os08g28670Os.51490.1.S1_at11/118+17377243..17378834ripening induced protein, putative, expressed
LOC_Os08g28670Os.9301.1.S1_at10/118+17377243..17378834ripening induced protein, putative, expressed
LOC_Os08g28670Os.9301.1.S1_x_at8/118+17377243..17378834ripening induced protein, putative, expressed
LOC_Os08g28680Os.10883.1.S1_at11/118+17380193..17383258Ubiquitin-conjugating enzyme E2 M, putative, expressed
LOC_Os08g28690Os.9391.1.S1_at11/118+17385534..17390235expressed protein
LOC_Os08g28690Os.48160.1.A1_s_at11/118+17385534..17390235expressed protein
LOC_Os08g28690Os.9391.1.S2_at11/118+17385534..17390235expressed protein
LOC_Os08g28700OsAffx.5969.1.S1_at10/118+17405588..17408068DnaJ domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9391.1.S2_at--304--5511Chr08:17386103..17386127 (25 bp)
GAACAAGGCACCAAGGACAATGGAT
LOC_Os08g28690
Os.9391.1.S2_at--638--2231Chr08:17386087..17386111 (25 bp)
ACAATGGATGCGCTCTTTGCACAAA
LOC_Os08g28690
Os.9391.1.S2_at--219--711Chr08:17386048..17386072 (25 bp)
ATGAGGACCATTCCACAGCAGCAGA
LOC_Os08g28690
Os.9391.1.S2_at--934--1511Chr08:17386032..17386056 (25 bp)
AGCAGCAGACGAATACTGCCCCTGG
LOC_Os08g28690
Os.9391.1.S2_at--410--4451Chr08:17385711..17385735 (25 bp)
GCCTTTTTGTGTTACTAGTTGCGAT
LOC_Os08g28690
Os.9391.1.S2_at--853--6671Chr08:17385694..17385718 (25 bp)
GTTGCGATGTTATATTTGGCATGCT
LOC_Os08g28690
Os.9391.1.S2_at--570--10091Chr08:17385657..17385681 (25 bp)
TAGGTTGATGTGTGCTATCGGATTT
LOC_Os08g28690
Os.9391.1.S2_at--835--7311Chr08:17385646..17385670 (25 bp)
GTGCTATCGGATTTTACAGTGTCGG
LOC_Os08g28690
Os.9391.1.S2_at--335--931Chr08:17385603..17385627 (25 bp)
AGGACCGACTTCTGTGTTAGTTTCA
LOC_Os08g28690
Os.9391.1.S2_at--126--6791Chr08:17385570..17385594 (25 bp)
GTTAGTTTCCGTTGGTGACACAATC
LOC_Os08g28690
Os.9391.1.S2_at--373--5631Chr08:17385554..17385578 (25 bp)
GACACAATCATTTCTCTCAGTAGGG
LOC_Os08g28690
Target Sequence 
GAACAAGGCACCAAGGACAATGGATGCGCTCTTTGCACAAATGAAGCAGCAGAGGATGAGGACCATTCCACAGCAGCAGA
CGAATACTGCCCCTGGCCGGCAGATTGCCCAGCANGCGGCGTAATCAGCAACAGCGGCGAGGAAGAGGATATGGTGGCCG
CAATGGTGGTAACCAATGAGTTCAACCACATCAAATGTCCTTCATGGGAGCATTTTCAGTTCACTGGTTTCTTGGGTGGG
AGAAGAACCCCTGGAATGCTAACTTGGCTTCTTTGTTCCCTTGTATTGTTAGGAGAGTCGCGGACAGAATCTTACTGAAG
TCTGTATGCAGTTTTTCTGGTTTCCTATTTCTGCTTCAGCTTGTATAATGTCCGATGGAGTGTATGAAAATTTGCCTTTT
TGTGTTACTAGTTGCGATGTTATATTTGGCATGCTTGTAGATAGTTATAGGTTGATGTGTGCTATCGGATTTTACAGTGT
CGGNTCAGTTTNTGAAAGTACAGGACCGACTTCTGTGTTAGTTTCAGTATTGGTGTTAGTTTCCGTTGGTGACACAATCA
TTTCTCTCAGTAGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9391.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis