Browse Element(s) Details


Os.9396.1.S1_at

Description gb:AK100981.1
DB_XREF= gi:32986190
TID=Os.9396.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9396 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023144M20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023144M20, full insert sequence.
FL= gb:AK100981.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4881011/11permease 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g48770Os.12106.1.S1_at1/113+27737404..27738087Oxalate oxidase 2 precursor, putative
LOC_Os03g48780Os.12106.1.S1_at11/113+27740207..27741221Oxalate oxidase 2 precursor, putative, expressed
LOC_Os03g48810Os.9396.1.S1_at11/113+27761365..27764926permease 1, putative, expressed
LOC_Os03g48820OsAffx.13415.1.S1_at11/113+27765109..27766344hypothetical protein
LOC_Os03g48830Os.56044.1.S1_at11/113+27769185..27772095expressed protein
LOC_Os03g48840Os.10994.1.S1_at11/113+27772221..27774889ribosomal protein L18 family protein, putative, expressed
LOC_Os03g48850Os.9507.1.S2_at11/113+27776040..27784335Valyl-tRNA synthetase, putative, expressed
LOC_Os03g48850Os.9507.1.S1_at11/113+27776040..27784335Valyl-tRNA synthetase, putative, expressed
LOC_Os03g48870OsAffx.13416.1.S1_at11/113+27785552..27786497expressed protein
LOC_Os03g48880OsAffx.25629.1.S1_at11/113+27787590..27789116Leucine Rich Repeat family protein

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
GO:0015646molecular_functionpermease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9396.1.S1_at--287--8711Chr03:27764264..27764288 (25 bp)
TGTCCATCCCACAGTACTTCAGGGA
LOC_Os03g48810
Os.9396.1.S1_at--739--1171Chr03:27764288..27764312 (25 bp)
AGTACGAGGTGTTCTACGTCTTCGG
LOC_Os03g48810
Os.9396.1.S1_at--142--8531Chr03:27764520..27764544 (25 bp)
TGGACTGCACGCACACCTACTGGGA
LOC_Os03g48810
Os.9396.1.S1_at--177--2831Chr03:27764591..27764615 (25 bp)
AAGTCTTACAGGCATGACCCGAGGA
LOC_Os03g48810
Os.9396.1.S1_at--1118--9171Chr03:27764634..27764658 (25 bp)
TGCCGTATGGCCTCAGCAAGTACTT
LOC_Os03g48810
Os.9396.1.S1_at--1042--10631Chr03:27764657..27764681 (25 bp)
TTCCCTTCGTTCTAGGCCAAAGGAT
LOC_Os03g48810
Os.9396.1.S1_at--273--491Chr03:27764708..27764732 (25 bp)
ATCTGGAGCCTTTAGCTTCACTGCT
LOC_Os03g48810
Os.9396.1.S1_at--735--3331Chr03:27764726..27764750 (25 bp)
CACTGCTGTGGCTGTTGCATGCAAA
LOC_Os03g48810
Os.9396.1.S1_at--373--6251Chr03:27764804..27764828 (25 bp)
GATGGTATTACCTCTGTCAACTTGG
LOC_Os03g48810
Os.9396.1.S1_at--1017--4471Chr03:27764845..27764869 (25 bp)
GCCTGGATGATCCTGCCATTGATTT
LOC_Os03g48810
Os.9396.1.S1_at--91--6531Chr03:27764871..27764895 (25 bp)
GATTTGGTTTTTGATCTCTGATCCA
LOC_Os03g48810
Target Sequence 
TGTCCATCCCACAGTACTTCAGGGAGTACGAGGTGTTCTACGTCTTCGGGCCAGTTCACACCCACTCACCCGCTTTCAAT
GTCATNGTCAACGTGATCTTCTCCTCGCCTGCGACGGTGGCCGCCATCCTCGCCTACCTCCTGGACTGCACGCACACCTA
CTGGGACGGCCCGGTGTGGAAGGACAGGGGCTTCCATTGGTGGGAGAAGTTCAAGTCTTACAGGCATGACCCGAGGAGCG
AGGAGTTCTACTCTCTGCCGTATGGCCTCAGCAAGTACTTCCCTTCGTTCTAGGCCAAAGGATGGCGAGAGGTAGAAGAC
GATGCAATCATCTGGAGCCTTTAGCTTCACTGCTGTGGCTGTTGCATGCAAAGCATTTTGGATATGAGATGTTGTGGATC
TAATGAAATGAAACTTAGAATTTTGGATGGTATTACCTCTGTCAACTTGGGGGGGGGGATTCAGGGGCCTGGATGATCCT
GCCATTGATTTTGATTTGGTTTTTGATCTCTGATCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9396.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis