Browse Element(s) Details


Os.9407.1.S1_at

Description gb:AK106073.1
DB_XREF= gi:32991282
TID=Os.9407.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.9407 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-206-H09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-206-H09, full insert sequence.
FL= gb:AK106073.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4961011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g49560Os.54479.1.S1_at11/114+29337808..29344158DHHC zinc finger domain containing protein, expressed
LOC_Os04g49570Os.15729.2.S1_at11/114+29346856..29351027Glutamate receptor 3.3 precursor, putative, expressed
LOC_Os04g49570Os.15729.2.S1_x_at11/114+29346856..29351027Glutamate receptor 3.3 precursor, putative, expressed
LOC_Os04g49570Os.15729.1.S1_at4/114+29346856..29351027Glutamate receptor 3.3 precursor, putative, expressed
LOC_Os04g49580Os.10745.1.S1_at10/114+29352529..29358583CBF/Mak21 family protein, expressed
LOC_Os04g49590Os.54732.1.S1_at11/114+29358868..29362046regulatory protein, putative, expressed
LOC_Os04g49600OsAffx.4129.1.S1_at11/114+29362520..29363676hypothetical protein
LOC_Os04g49610Os.9407.1.S1_at11/114+29364754..29366574expressed protein
LOC_Os04g49620Os.51206.1.S1_at11/114+29369164..29371427expressed protein
LOC_Os04g49630OsAffx.14346.1.S1_at10/114+29372531..29374632hypothetical protein
LOC_Os04g49640OsAffx.19542.3.S1_x_at3/114+29377372..29381311retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g49650Os.12323.1.S1_a_at11/114+29386589..29388086expressed protein
LOC_Os04g49650Os.12323.2.S1_at11/114+29386589..29388086expressed protein
LOC_Os04g49650Os.12323.1.S1_at11/114+29386589..29388086expressed protein
LOC_Os04g49660OsAffx.26384.4.S1_at3/114+29391364..29392042expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9407.1.S1_at--781--5731Chr04:29365375..29365399 (25 bp)
GACTGGTGATATCGAGACCTTCAGG
LOC_Os04g49610
Os.9407.1.S1_at--92--5851Chr04:29365360..29365384 (25 bp)
GACCTTCAGGTTTGTTCAGAGAGCT
LOC_Os04g49610
Os.9407.1.S1_at--865--8291Chr04:29365331..29365355 (25 bp)
GGCTTATTTTCCCTAGTGCTCTGAA
LOC_Os04g49610
Os.9407.1.S1_at--1159--5451Chr04:29365055..29365079 (25 bp)
GAACTCAAACAGTGTCGTCCTTTCT
LOC_Os04g49610
Os.9407.1.S1_at--934--2091Chr04:29365004..29365028 (25 bp)
ACATCCTTGTGGAAAACTCCTGTGG
LOC_Os04g49610
Os.9407.1.S1_at--196--10051Chr04:29364934..29364958 (25 bp)
TAGTTAGTTTCCAAGTTAGTCCACG
LOC_Os04g49610
Os.9407.1.S1_at--379--10251Chr04:29364919..29364943 (25 bp)
TTAGTCCACGACCACGAGTTGTTGG
LOC_Os04g49610
Os.9407.1.S1_at--901--1511Chr04:29364890..29364914 (25 bp)
AGCAGGCAACCAGGCTGATCAGAGT
LOC_Os04g49610
Os.9407.1.S1_at--201--411Chr04:29364873..29364897 (25 bp)
ATCAGAGTGAGGCACCTGCTGTTTT
LOC_Os04g49610
Os.9407.1.S1_at--468--3831Chr04:29364858..29364882 (25 bp)
CTGCTGTTTTCAGGTTTCTGCAAAT
LOC_Os04g49610
Os.9407.1.S1_at--253--2591Chr04:29364792..29364816 (25 bp)
AACGTTGCATGCTTGCTCTATCTGA
LOC_Os04g49610
Target Sequence 
GACTGGTGATATCGAGACCTTCAGGTTTGTTCAGAGAGCTTNGAGGCTTATTTTCCCTAGTGCTCTGAAGGAGGATGTTC
AACATAGAAACAAGGGAAAATCAATCAGAATGGGCAGCGGTAACAGGAGAATTCCATCAGCACATGAATCTAGAGAAAAG
CTTCGTAATTCAGATATCTTCAAAAGGAGACTTGATGAGCCCAACGACGAGAAACAAAACAAATCAGATTGGAACTGAAC
TCAAACAGTGTCGTCCTTTCTCTTGTCAAGCTGTTTAAGGAAGATCCACATCCTTGTGGAAAACTCCTGTGGNTGCTTGC
AAAACCGATGTGCAGTATGTCAAATTAGGCTTAGGTGTAGTTAGTTTCCAAGTTAGTCCACGACCACGAGTTGTTGGATC
AAGCAGGCAACCAGGCTGATCAGAGTGAGGCACCTGCTGTTTTCAGGTTTCTGCAAATTATGTTTTGTTTGTTGTGTGTA
GCATTCAGCAAGAATAATTAACGTTGCATGCTTGCTCTATCTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9407.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis