Browse Element(s) Details


Os.9421.1.S1_at

Description gb:NM_195297.1
DB_XREF= gi:37531953
TID=Os.9421.1
CNT=14
FEA=mRNA
TIER=ConsEnd
STK=4
UG=Os.9421 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative type-1 pathogenesis-related protein (OSJNBa0040E17.3), mRNA.
PROD=putative type-1 pathogenesis-related protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1150011/11Pathogenesis-related protein PRB1-2 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g11454Os.45173.1.S1_x_at6/1110+6100800..6114756transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g11454Os.47999.2.A1_x_at3/1110+6100800..6114756transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g11454OsAffx.20691.1.A1_x_at1/1110+6100800..6114756transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g11454OsAffx.28520.1.S1_at1/1110+6100800..6114756transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g11454Os.47999.3.A1_x_at1/1110+6100800..6114756transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g11480OsAffx.20646.1.S1_at11/1110+6126694..6127385hypothetical protein
LOC_Os10g11500Os.9421.1.S1_at11/1110+6135266..6135958Pathogenesis-related protein PRB1-2 precursor, putative, expressed
LOC_Os10g11500OsAffx.28437.1.S1_s_at1/1110+6135266..6135958Pathogenesis-related protein PRB1-2 precursor, putative, expressed
LOC_Os10g11506OsAffx.28661.1.S1_x_at2/1110+6138887..6141844retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g11512NANA10+6148916..6149151hypothetical protein
LOC_Os10g11520OsAffx.20707.2.S1_x_at11/1110+6150413..6150925pyridoxin biosynthesis protein ER1, putative
LOC_Os10g11520OsAffx.20707.2.S1_at11/1110+6150413..6150925pyridoxin biosynthesis protein ER1, putative
LOC_Os10g11520Os.36435.2.S1_x_at5/1110+6150413..6150925pyridoxin biosynthesis protein ER1, putative
LOC_Os10g11520OsAffx.20707.1.S1_x_at1/1110+6150413..6150925pyridoxin biosynthesis protein ER1, putative
LOC_Os10g11530OsAffx.20644.1.S1_at11/1110+6151554..6153775hypothetical protein
LOC_Os10g11540OsAffx.8391.1.S1_at9/1110+6156216..6157956transposon protein, putative, unclassified
LOC_Os10g11540OsAffx.32036.1.S1_at1/1110+6156216..6157956transposon protein, putative, unclassified
LOC_Os10g11550NANA10+6159467..6159940hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009627biological_processsystemic acquired resistance
GO:0009723biological_processresponse to ethylene stimulus
GO:0009751biological_processresponse to salicylic acid stimulus
GO:0009753biological_processresponse to jasmonic acid stimulus
GO:0005576cellular_componentextracellular region
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9421.1.S1_at--167--10651Chr10:6135460..6135484 (25 bp)
TTCGCGCAGAGCTACGCGGCCAAGC
LOC_Os10g11500
Os.9421.1.S1_at--329--5371Chr10:6135600..6135624 (25 bp)
GAAGAAGAACTACCACTACGACACC
LOC_Os10g11500
Os.9421.1.S1_at--852--4371Chr10:6135623..6135647 (25 bp)
CCAACACGTGCGACCCGGGCAAGGT
LOC_Os10g11500
Os.9421.1.S1_at--1032--4691Chr10:6135802..6135826 (25 bp)
GCGGCCAAGTAGACGACCACTCACT
LOC_Os10g11500
Os.9421.1.S1_at--613--2791Chr10:6135808..6135832 (25 bp)
AAGTAGACGACCACTCACTCGTACA
LOC_Os10g11500
Os.9421.1.S1_at--895--2011Chr10:6135820..6135844 (25 bp)
ACTCACTCGTACACAGTCGTGTTGA
LOC_Os10g11500
Os.9421.1.S1_at--569--9851Chr10:6135829..6135853 (25 bp)
TACACAGTCGTGTTGAACTGCATGC
LOC_Os10g11500
Os.9421.1.S1_at--1018--9171Chr10:6135862..6135886 (25 bp)
TGCCGCAGTACATTTCATCGATGTT
LOC_Os10g11500
Os.9421.1.S1_at--234--3551Chr10:6135877..6135901 (25 bp)
CATCGATGTTTGTGACTCTGGGATC
LOC_Os10g11500
Os.9421.1.S1_at--808--8931Chr10:6135889..6135913 (25 bp)
TGACTCTGGGATCGACGTCCGTGAA
LOC_Os10g11500
Os.9421.1.S1_at--87--9371Chr10:6135900..6135924 (25 bp)
TCGACGTCCGTGAACAATAAAGCAT
LOC_Os10g11500
Target Sequence 
TTCGCGCAGAGCTACGCGGCCAAGCGCGCCGGCGACTGCCGGCTNGCAGCACTCCGGCGGGCCGTACGGCGAGAACATCT
TCTGGGGCTCGGCGGGGCGCGCCTGGAGCGCCGCCGACGCGGTGGCGTCGTGGGTGGGCGAGAAGAAGAACTACCACTAC
GACACCAACACGTGCGACCCGGGCAAGGTGTGCGGCCACTACACCCAGGTGGTGTGGCGCAAGTCGGTGCGCATCGGNTG
CGCCCGCGTCGTGTGCGCGGCGAACCGCGGCGTGTTCATCACCTGCAACTACGACCCCCCGGGCAACTTCAACGGCGAGC
GCCCGTTCCTCACCCTCGACGCCGCGGCCAAGTAGACGACCACTCACTCGTACACAGTCGTGTTGAACTGCATGCTATGT
CGNTGCCGCAGTACATTTCATCGATGTTTGTGACTCTGGGATCGACGTCCGTGAACAATAAAGCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9421.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis