Browse Element(s) Details


Os.9454.1.S1_at

Description gb:AK121834.1
DB_XREF= gi:37991457
TID=Os.9454.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.9454 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033100C02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033100C02, full insert sequence.
FL= gb:AK121834.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3278011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g32730OsAffx.19130.1.S1_at11/1111+18836274..18836675hypothetical protein
LOC_Os11g32740OsAffx.19131.1.S1_at11/1111+18847494..18847802hypothetical protein
LOC_Os11g32750Os.33742.1.S1_at11/1111+18851426..18855715Nudix hydrolase 13, mitochondrial precursor, putative, expressed
LOC_Os11g32759Os.11375.1.S1_at11/1111+18853271..18856610expressed protein
LOC_Os11g32759Os.9786.1.S1_at10/1111+18853271..18856610expressed protein
LOC_Os11g32770OsAffx.26050.2.S2_x_at3/1111+18857091..18857414Ribulose bisphosphate carboxylase large chain, putative
LOC_Os11g32780Os.9454.1.S1_at11/1111+18861036..18864624expressed protein
LOC_Os11g32790Os.57204.1.S1_at1/1111+18867690..18869106hypothetical protein
LOC_Os11g32800NANA11+18873982..18874634hypothetical protein
LOC_Os11g32810Os.51030.1.S1_at11/1111+18884307..18887261expressed protein
LOC_Os11g32820OsAffx.7280.1.S1_at11/1111+18889036..18889470expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9454.1.S1_at--656--1691Chr11:18864163..18864187 (25 bp)
AGCCATCTCGGAGCTTTGACGTGGA
LOC_Os11g32780
Os.9454.1.S1_at--801--1051Chr11:18864259..18864283 (25 bp)
AGGGTCTGAGGCAGTACATCACGGA
LOC_Os11g32780
Os.9454.1.S1_at--689--451Chr11:18864322..18864346 (25 bp)
ATCTCACCCTGGGAGAGCCAGTTAT
LOC_Os11g32780
Os.9454.1.S1_at--372--6791Chr11:18864342..18864366 (25 bp)
GTTATGCCGTAGAGTGATTCCTTCA
LOC_Os11g32780
Os.9454.1.S1_at--662--3312Chr11:18864365..18864389 (25 bp)
CACAGTGTTGTTTTGAGTCTTCATC
LOC_Os11g32780
Os.9454.1.S1_at--336--5531Chr11:18864392..18864416 (25 bp)
GAAACTTGTTGCCTTTAGCTTACTG
LOC_Os11g32780
Os.9454.1.S1_at--636--3671Chr11:18864404..18864428 (25 bp)
CTTTAGCTTACTGATGTCTCCGTAT
LOC_Os11g32780
Os.9454.1.S1_at--855--9492Chr11:18864420..18864444 (25 bp)
TCTCCGTATATGTGCCTCTTCTAAA
LOC_Os11g32780
Os.9454.1.S1_at--1042--1191Chr11:18864449..18864473 (25 bp)
AGTTTCCAGAATCTGCATGTCCCAG
LOC_Os11g32780
Os.9454.1.S1_at--320--5691Chr11:18864478..18864502 (25 bp)
GACTAGTAACCACTTATTTCCTGAA
LOC_Os11g32780
Os.9454.1.S1_at--610--10411Chr11:18864491..18864515 (25 bp)
TTATTTCCTGAATCTGCATGTCCCA
LOC_Os11g32780
Target Sequence 
AGCCATCTCGGAGCTTTGACGTGGAGNACATCGATGCCGTGNCTTGCTGCGCGTGGTCGGCTCCGTGGTCAGATNGTACA
GGCCCGAGCAGACATGGAGGGTCTGAGGCAGTACATCACGGAGACGTGGTTGCCNGTGGGTAGAGNCAGCGGTTGAACAC
TCATCTCACCCTGGGAGAGCCAGTTATGCCGTAGAGTGATTCCTTCACAGTGTTGTTTTGAGTCTTCATCATGAAACTTG
TTGCCTTTAGCTTACTGATGTCTCCGTATATGTGCCTCTTCTAAACTGTAGTTTCCAGAATCTGCATGTCCCAGGATTGA
CTAGTAACCACTTATTTCCTGAATCTGCATGTCCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9454.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis