Browse Element(s) Details


Os.9457.1.S1_at

Description gb:AK068461.1
DB_XREF= gi:32978479
TID=Os.9457.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.9457 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013153P08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013153P08, full insert sequence.
FL= gb:AK068461.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g508306/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g50790OsAffx.12580.1.S1_x_at11/112+31003317..31027548Viral A-type inclusion protein repeat containing protein, expressed
LOC_Os02g50790Os.27411.1.A1_at11/112+31003317..31027548Viral A-type inclusion protein repeat containing protein, expressed
LOC_Os02g50790Os.52711.1.S1_x_at11/112+31003317..31027548Viral A-type inclusion protein repeat containing protein, expressed
LOC_Os02g50810Os.52778.1.S1_at11/112+31032683..31034651expressed protein
LOC_Os02g50820Os.8916.1.S1_at11/112+31040376..31045820Permease I, putative, expressed
LOC_Os02g50830Os.9457.1.S1_at6/112+31049884..31053287expressed protein
LOC_Os02g50840Os.16883.1.S1_a_at11/112+31058195..31065395BAH domain containing protein, expressed
LOC_Os02g50840Os.15456.2.S1_x_at6/112+31058195..31065395BAH domain containing protein, expressed
LOC_Os02g50850Os.8858.1.S1_a_at11/112+31072266..31078068BAH domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9457.1.S1_at--846--10851Chr02:31051298..31051322 (25 bp)
TTGGTGTCACCCCAGAAGCTCAAAG
LOC_Os02g50830
Os.9457.1.S1_at--202--1391Chr02:31050373..31050393 (21 bp)
AGACGCTTCCAGTTCAGTGGGACAA
LOC_Os02g50830
Os.9457.1.S1_at--1078--971Chr02:31050328..31050352 (25 bp)
AGGAGGTTCGTGTATGCAATCCATA
LOC_Os02g50830
Os.9457.1.S1_at--672--5151Chr02:31050313..31050337 (25 bp)
GCAATCCATACCTGCCTGAAAATGT
LOC_Os02g50830
Os.9457.1.S1_at--760--2091Chr02:31050278..31050302 (25 bp)
ACATCTGCTGCAAATGAACGGGTTA
LOC_Os02g50830
Os.9457.1.S1_at--886--8151Chr02:31049897..31049921 (25 bp)
GGAAAAGGCTACATGTGCGTGTACC
LOC_Os02g50830
Os.9457.1.S1_at--874--10571Chr02:31049865..31049889 (25 bp)
TTCTAACTTATTCGGCTGCTTTTCA
NONE
Os.9457.1.S1_at--207--3651Chr02:31049828..31049852 (25 bp)
CTTTGTACTCTACTTTAAGGGCTGA
NONE
Os.9457.1.S1_at--922--10791Chr02:31049779..31049803 (25 bp)
TTGTTTCTGCAAAATCCATGCCATA
NONE
Os.9457.1.S1_at--772--2391Chr02:31049755..31049779 (25 bp)
AAACTATCTCATCAGCTAGCTAAAT
NONE
Os.9457.1.S1_at--18--131Chr02:31049641..31049665 (25 bp)
ATTCAGCTGCTGGTTGTAAGAGGGC
NONE
Target Sequence 
TTGGTGTCACCCCAGAAGCTCAAAGCATATTTGATGCATTGTCCAAGACGCTTCCAGTTCAGTGGGACAAGACTGACATT
GTTGTAATGAAGGAGGTTCGTGTATGCAATCCATACCTGCCTGAAAATGTCAGTGGAGGAACATCTGCTGCAAATGAACG
GGTTAAGAAAGTGCTTGACTTTGAAAGGAAAAGGCTACATGTGCGTGTACCTGGCCNATTCTAACTTATTCGGCTGCTTT
TCACCTGAACTCCCCCTTTGTACTCTACTTTAAGGGCTGAATCATCNATAGATTTTTNTAAAATTTGTTTCTGCAAAATC
CATGCCATAAACTATCTCATCAGCTAGCTAAATCTGTATCCTGTTATAGATATCTCATCAGCTAGCTAAATCTGTATCCT
GTTATAGATGTGNCCTTCGAATAAATTGTCATGCTGATGTTAATTCAGCTGCTGGTTGTAAGAGGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9457.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis