Browse Element(s) Details


Os.9467.1.S1_at

Description gb:AK073865.1
DB_XREF= gi:32983888
TID=Os.9467.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9467 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033074H23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033074H23, full insert sequence.
FL= gb:AK073865.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4420011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g44150Os.11134.1.S1_at11/116+26634666..26638723magnesium transporter CorA-like family protein, putative, expressed
LOC_Os06g44160Os.34316.1.S1_at11/116+26645327..26646796DnaJ domain containing protein, expressed
LOC_Os06g44160Os.47474.1.S1_x_at11/116+26645327..26646796DnaJ domain containing protein, expressed
LOC_Os06g44160Os.47474.1.S1_at9/116+26645327..26646796DnaJ domain containing protein, expressed
LOC_Os06g44170Os.11290.1.S1_at10/116+26649154..26651373NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os06g44180Os.51814.1.S1_at11/116+26651927..26658234NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os06g44190NANA6+26659030..26659360hypothetical protein
LOC_Os06g44200Os.9467.1.S1_at11/116+26660041..26663598expressed protein
LOC_Os06g44210Os.46083.1.S1_a_at11/116+26664154..26668595protein phosphatase type-2C, putative, expressed
LOC_Os06g44220Os.55687.1.S1_at1/116+26675856..26676198Uncharacterized protein family protein
LOC_Os06g44230Os.4148.1.S2_a_at11/116+26679172..26689052DNA-directed RNA polymerase 3, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info

Probe NameHit(s)LocationSequenceTIGR Locus
Os.9467.1.S1_at--168--10391Chr06:26660528..26660552 (25 bp)
TTATGCCAAACATATGCCCGTTCTC
LOC_Os06g44200
Os.9467.1.S1_at--1022--831Chr06:26660493..26660517 (25 bp)
ATGGAGCTCACAGGGTAACAACACT
LOC_Os06g44200
Os.9467.1.S1_at--155--6651Chr06:26660403..26660427 (25 bp)
GTTGTTTATGAGTTGTGCCCTCTGT
LOC_Os06g44200
Os.9467.1.S1_at--751--7271Chr06:26660380..26660404 (25 bp)
GTGCCTAGCGCCATAGATGACTTGC
LOC_Os06g44200
Os.9467.1.S1_at--770--10291Chr06:26660351..26660375 (25 bp)
TTTCTAACTTGAGTGCCAGTGTCCA
LOC_Os06g44200
Os.9467.1.S1_at--332--10271Chr06:26660320..26660344 (25 bp)
TTTGCATGGAACATTTCTCCCTAAT
LOC_Os06g44200
Os.9467.1.S1_at--113--9511Chr06:26660305..26660329 (25 bp)
TCTCCCTAATTTGTGTAGCTTGTTA
LOC_Os06g44200
Os.9467.1.S1_at--944--4451Chr06:26660177..26660201 (25 bp)
GCCTCTATGCTACTGCTAGTTGCAT
LOC_Os06g44200
Os.9467.1.S1_at--990--3851Chr06:26660121..26660145 (25 bp)
CTGAGCTGAGTCCTGTCTATATAGA
LOC_Os06g44200
Os.9467.1.S1_at--64--6151Chr06:26660098..26660122 (25 bp)
GAGGTGACGAGTTGCTTAGCTCCCT
LOC_Os06g44200
Os.9467.1.S1_at--51--10011Chr06:26660082..26660106 (25 bp)
TAGCTCCCTGTAACTGTACTTCAGT
LOC_Os06g44200
Target Sequence
TTATGCCAAACATATGCCCGTTCTCTCTTCAACATATGGAGCTCACAGGGTAACAACACTACTTAGGGATAAATTTTTCT
TGTAAAGTTGTTTGGCTACTGGTAATCAAGTTAGGAACCATGCAAGTTGTTTATGAGTTGTGCCCTCTGTGCCTAGCGCC
ATAGATGACTTGCAAGATTTCTAACTTGAGTGCCAGTGTCCAAGTAATTTTGCATGGAACATTTCTCCCTAATTTGTGTA
GCTTGTTATTCTGTAAGGTGCATATGTTACCAGAANGGATAATTTGCATGATCTCAGAGAGAAACTGATGTGGGCATGCG
AAGTATTTTCAGCGAGTTCAATATCNTTAGCCGCCTCTATGCTACTGCTAGTTGCATTAGNTTTTGATTGATGCNNTTGG
CAGNTGACCAANCTGAGCTGAGTCCTGTCTATATAGAGGTGACGAGTTGCTTAGCTCCCTGTAACTGTACTTCAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9467.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis