Browse Element(s) Details


Os.9481.1.S1_at

Description gb:AK065710.1
DB_XREF= gi:32975728
TID=Os.9481.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.9481 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-033-D12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013043L03, full insert sequence.
FL= gb:AK065710.1 gb:AK099040.1 gb:AK104338.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3192411/11nodulin family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g31900Os.11702.1.S1_at11/114+18918517..18926150CG-1 domain containing protein, expressed
LOC_Os04g31910OsAffx.27508.131.S1_s_at11/114+18926496..18929443expressed protein
LOC_Os04g31924Os.9481.1.S1_at11/114+18935170..18939679nodulin family protein, putative, expressed
LOC_Os04g31924Os.54876.1.S1_at11/114+18935170..18939679nodulin family protein, putative, expressed
LOC_Os04g31940Os.15102.1.S1_at11/114+18942783..18945524DnaJ domain containing protein, expressed
LOC_Os04g31940Os.20347.1.S1_at1/114+18942783..18945524DnaJ domain containing protein, expressed
LOC_Os04g31950Os.56343.1.S1_at11/114+18946855..18952183U6 snRNA-associated Sm-like protein LSm6, putative, expressed
LOC_Os04g31950Os.7048.1.S1_at10/114+18946855..18952183U6 snRNA-associated Sm-like protein LSm6, putative, expressed
LOC_Os04g31960Os.56217.1.S1_at4/114+18954687..18956676Acetolactate synthase III, chloroplast precursor, putative
LOC_Os04g31960OsAffx.12073.1.S1_at1/114+18954687..18956676Acetolactate synthase III, chloroplast precursor, putative
LOC_Os04g31970OsAffx.3971.1.S1_at11/114+18961252..18961710hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9481.1.S1_at--1130--4571Chr04:18939084..18939108 (25 bp)
GCGCAATGTACAATTTTCTCACAGT
LOC_Os04g31924
Os.9481.1.S1_at--661--3131Chr04:18939095..18939119 (25 bp)
AATTTTCTCACAGTAGCAAACCCCA
LOC_Os04g31924
Os.9481.1.S1_at--819--9611Chr04:18939144..18939168 (25 bp)
TCATCGCTAGTAACTTGTATGACTA
LOC_Os04g31924
Os.9481.1.S1_at--751--751Chr04:18939296..18939320 (25 bp)
ATGTCAGCATTCTGCATTGTTGGAG
LOC_Os04g31924
Os.9481.1.S1_at--382--51Chr04:18939311..18939335 (25 bp)
ATTGTTGGAGCTGGCCTTAGCCTCA
LOC_Os04g31924
Os.9481.1.S1_at--1110--10431Chr04:18939327..18939351 (25 bp)
TTAGCCTCATCGTCGTTCACAGGAC
LOC_Os04g31924
Os.9481.1.S1_at--339--6111Chr04:18939357..18939381 (25 bp)
GAGTGTATGCTAACCTCTATCGAGC
LOC_Os04g31924
Os.9481.1.S1_at--1123--9791Chr04:18939367..18939391 (25 bp)
TAACCTCTATCGAGCTGTCCGCTGA
LOC_Os04g31924
Os.9481.1.S1_at--435--8711Chr04:18939382..18939406 (25 bp)
TGTCCGCTGACTTGAAATTTCCATG
LOC_Os04g31924
Os.9481.1.S1_at--41--4311Chr04:18939427..18939451 (25 bp)
CCTTTTGTTGTTCCATGTTACCTGT
LOC_Os04g31924
Os.9481.1.S1_at--910--7151Chr04:18939483..18939507 (25 bp)
GTCTACCTGTAAAGTTTCAGATCAT
LOC_Os04g31924
Target Sequence 
GCGCAATGTACAATTTTCTCACAGTAGCAAACCCCACAGGGTCACTGATCTTCTCAGGTGTCATCGCTAGTAACTTGTAT
GACTATGAAGCTGAGAAGCAAGCGCACCACCAGAGTTCTTTGTCTGGACGATCTCTTTTCGACATGAGCTTCCTCGCAGA
GGGTCCTCTGAAGTGTGAAGGAGCTGTTTGCTTCTTTGTCAGCTCATTGATCATGTCAGCATTCTGCATTGTTGGAGCTG
GCCTTAGCCTCATCGTCGTTCACAGGACCAAGCGAGTGTATGCTAACCTCTATCGAGCTGTCCGCTGACTTGAAATTTCC
ATGGATAGAAGATGGTGAATCCCCCTTTTGTTGTTCCATGTTACCTGTATTATTGTGTACATGATTCAAGATACACAAAG
TCTACCTGTAAAGTTTCAGATCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9481.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis