Browse Element(s) Details


Os.9498.1.S1_at

Description gb:AK064358.1
DB_XREF= gi:32974376
TID=Os.9498.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9498 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023131O08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-108-B07, full insert sequence.
FL= gb:AK072626.1 gb:AK064358.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4807011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g48020Os.12395.1.S1_at11/115+27446984..27450497Syntaxin 72, putative, expressed
LOC_Os05g48030Os.54375.1.S1_at11/115+27451010..27456216Anti-silencing protein 1, putative, expressed
LOC_Os05g48030OsAffx.15141.3.S1_s_at11/115+27451010..27456216Anti-silencing protein 1, putative, expressed
LOC_Os05g48030Os.50851.1.S1_at11/115+27451010..27456216Anti-silencing protein 1, putative, expressed
LOC_Os05g48030Os.8747.1.S2_x_at1/115+27451010..27456216Anti-silencing protein 1, putative, expressed
LOC_Os05g48040Os.32283.1.S1_at11/115+27458858..27462800MATE efflux family protein, expressed
LOC_Os05g48040Os.11344.1.S1_s_at11/115+27458858..27462800MATE efflux family protein, expressed
LOC_Os05g48050Os.53508.1.S1_at11/115+27463712..27465515Ribosomal protein L7/L12 C-terminal domain containing protein, expressed
LOC_Os05g48060Os.54269.1.S1_s_at11/115+27469321..27474965Phosphatidyl serine synthase family protein, expressed
LOC_Os05g48070Os.9498.1.S1_at11/115+27475473..27479753expressed protein
LOC_Os05g48090NANA5+27483657..27486961transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g48100NANA5+27488546..27491031transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g48110Os.47463.1.S1_x_at5/115+27491286..27493497transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g48110Os.14491.2.S1_x_at4/115+27491286..27493497transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g48120NANA5+27501503..27504934hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9498.1.S1_at--712--4751Chr05:27479242..27479266 (25 bp)
GCTGCTGACCAGATTAACGACCTCG
LOC_Os05g48070
Os.9498.1.S1_at--388--6991Chr05:27479277..27479301 (25 bp)
GTACCCACCACAAGACTTATCTGAG
LOC_Os05g48070
Os.9498.1.S1_at--41--7791Chr05:27479383..27479407 (25 bp)
GGTGCCTTTGTAGCCCTTGAAAGAT
LOC_Os05g48070
Os.9498.1.S1_at--375--2851Chr05:27479413..27479437 (25 bp)
AAGTCCCTGGGAGCTCTAGAAGTGG
LOC_Os05g48070
Os.9498.1.S1_at--104--2451Chr05:27479468..27479492 (25 bp)
AAAATCTTACCATTAGCTCGTCCTG
LOC_Os05g48070
Os.9498.1.S1_at--1130--6451Chr05:27479528..27479552 (25 bp)
GATAATATGTCCTCTTGTTCGAGCT
LOC_Os05g48070
Os.9498.1.S1_at--673--5911Chr05:27479548..27479572 (25 bp)
GAGCTATAAGCTTTTGTTGTTCAAC
LOC_Os05g48070
Os.9498.1.S1_at--122--751Chr05:27479586..27479610 (25 bp)
ATGTATAATCCTTTCCAGTGTGAGA
LOC_Os05g48070
Os.9498.1.S1_at--719--3011Chr05:27479614..27479638 (25 bp)
AATGCTTATTGCTTAGCCTGCTTTG
LOC_Os05g48070
Os.9498.1.S1_at--985--9231Chr05:27479643..27479667 (25 bp)
TCCTTTCTTTTTGCATCTGGGTGAA
LOC_Os05g48070
Os.9498.1.S1_at--846--1851Chr05:27479699..27479723 (25 bp)
ACGACATTTCACTCCATTCATTATA
LOC_Os05g48070
Target Sequence 
GCTGCTGACCAGATTAACGACCTCGGGGCGTCTGTGTACCCACCACAAGACTTATCTGAGATGAAATCCTCAGTGAAAAG
ATTGTATGGTGGCGCCAATGCAATGCGGAGGGAAATCNGGAGCCTTGGTGGCTCACCTGAGGGTGCCTTTGTAGCCCTTG
AAAGATTTGAGAAGTCCCTGGGAGCTCTAGAAGTGGAGATAGCTGATGATGTAGCAAACGAGATGGAAAATCTTACCATT
AGCTCGTCCTGATTGCTGGAACTTGAAAGATTTGCCATACCTATATGATAATATGTCCTCTTGTTCGAGCTATAAGCTTT
TGTTGTTCAACTAAAACGATGAATATGTATAATCCTTTCCAGTGTGAGATCAAATGCTTATTGCTTAGCCTGCTTTGCTG
TTCCTTTCTTTTTGCATCTGGGTGAAGGCAATGTCTTTGTCAAATGCCACAAGACTGACGACATTTCACTCCATTCATTA
TA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9498.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis