Browse Element(s) Details


Os.9510.1.S1_s_at

Description gb:AK061460.1
DB_XREF= gi:32971478
TID=Os.9510.1
CNT=30
FEA=FLmRNA
TIER=FL+Stack
STK=10
UG=Os.9510 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-038-A08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-308-B04, full insert sequence.
FL= gb:AK104717.1 gb:AK098976.1 gb:AK061460.1 gb:AK099013.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1269011/11DCN1-like protein 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g12650OsAffx.4816.1.S1_at11/116+6906712..6909524hypothetical protein
LOC_Os06g12660Os.51586.1.S1_at8/116+6914784..6915583expressed protein
LOC_Os06g12660OsAffx.15392.1.S1_at1/116+6914784..6915583expressed protein
LOC_Os06g12660Os.4657.1.S1_at1/116+6914784..6915583expressed protein
LOC_Os06g12669NANA6+6920622..6921359NA
LOC_Os06g12680Os.55422.1.S1_at11/116+6922216..6923998Zinc finger, C3HC4 type family protein, expressed
LOC_Os06g12690Os.9510.1.S1_s_at11/116+6927366..6931491DCN1-like protein 2, putative, expressed
LOC_Os06g12700OsAffx.15394.1.S1_at11/116+6936046..6936369hypothetical protein
LOC_Os06g12710NANA6+6937496..6943387retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g12720Os.50255.1.S1_at3/116+6944034..6946819retrotransposon protein, putative, unclassified
LOC_Os06g12720Os.46995.1.S1_x_at1/116+6944034..6946819retrotransposon protein, putative, unclassified
LOC_Os06g12730NANA6+6949488..6950000hypothetical protein
LOC_Os06g12740Os.4810.1.S1_s_at11/116+6952701..6955077expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9510.1.S1_s_at--140--10671Chr06:6928668..6928692 (25 bp)
TTCCGTGAGATATACAACTTTGCTT
LOC_Os06g12690
Os.9510.1.S1_s_at--12--10271Chr06:6928650..6928674 (25 bp)
TTTGCTTTTGCTTGGGCTAGGGAAA
LOC_Os06g12690
Os.9510.1.S1_s_at--467--1051Chr06:6928484..6928508 (25 bp)
AGGGTCAAAAATCTCTCGCACTGGA
LOC_Os06g12690
Os.9510.1.S1_s_at--856--9351Chr06:6928469..6928493 (25 bp)
TCGCACTGGAGACTGCTCTTGGAAT
LOC_Os06g12690
Os.9510.1.S1_s_at--133--4831Chr06:6928455..6928479 (25 bp)
GCTCTTGGAATGTGGCAGTTGCTCT
LOC_Os06g12690
Os.9510.1.S1_s_at--376--8271Chr06:6928442..6928466 (25 bp)
GGCAGTTGCTCTTTGCTGAAAGGCA
LOC_Os06g12690
Os.9510.1.S1_s_at--1106--511Chr06:6928407..6928431 (25 bp)
ATCGACCATTGGTGCCAGTTTTTAC
LOC_Os06g12690
Os.9510.1.S1_s_at--631--2411Chr06:6928261..6928285 (25 bp)
AATAAAGCCATTTCTAGGGACACAT
LOC_Os06g12690
Os.9510.1.S1_s_at--640--10251Chr06:6927951..6928243 (25 bp)
TTTGTCAAGACGATCGATCCACAGT
LOC_Os06g12690
Os.9510.1.S1_s_at--148--6371Chr06:6927936..6927960 (25 bp)
GATCCACAGTTATCCAACTACGACG
LOC_Os06g12690
Os.9510.1.S1_s_at--476--6571Chr06:6927766..6927790 (25 bp)
GATTCATCTCGGTCTATACAGTGTT
LOC_Os06g12690
Target Sequence 
TTCCGTGAGATATACAACTTTGCTTTTGCTTGGGCTAGGGAAAAGGGTCAAAAATCTCTCGCACTGGAGACTGCTCTTGG
AATGTGGCAGTTGCTCTTTGCTGAAAGGCACTGGCCCCTTATCGACCATTGGTGCCAGTTTTTACAGGTGAGGCATAATA
AAGCCATTTCTAGGGACACATGGTCTCAACTGTTGGAATTTGTCAAGACGATCGATCCACAGTTATCCAACTACGACGAA
GAAGGTGCTTGGCCCTACCTAATAGATGAATTTGTGGAGTACCTAACCGAGAATGGATTCGTTCAGCTTAGGAAGTGAAC
AATGGGAGGCCCACATTCTCACTACTTCAAATACAATCATGATTGGGCTGTACAAACGTGTGAGATTCATCTCGGTCTAT
ACAGTGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9510.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis