Browse Element(s) Details


Os.9524.1.S2_at

Description gb:AK073036.1
DB_XREF= gi:32983059
TID=Os.9524.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9524 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OSJNBb0032K15.9 (OSJNBb0032K15.9), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023147O12, full insert sequence.
FL= gb:AK073036.1 gb:AK069291.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4635011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g46320NANA1+26675299..26678631transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g46330Os.14491.2.S1_x_at4/111+26681581..26685281transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g46330Os.47463.1.S1_x_at4/111+26681581..26685281transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g46340Os.41519.1.S1_at11/111+26691357..26696371expressed protein
LOC_Os01g46340Os.50843.1.S1_at11/111+26691357..26696371expressed protein
LOC_Os01g46350Os.9524.1.S1_at11/111+26695246..26700949expressed protein
LOC_Os01g46350Os.9524.1.S2_at11/111+26695246..26700949expressed protein
LOC_Os01g46360OsAffx.23686.2.S1_at11/111+26704259..26705009hypothetical protein
LOC_Os01g46360OsAffx.23686.1.S1_s_at11/111+26704259..26705009hypothetical protein
LOC_Os01g46370Os.41516.1.S1_at11/111+26710443..26713872lipase class 3 family protein, putative, expressed
LOC_Os01g46370Os.51595.1.S1_at10/111+26710443..26713872lipase class 3 family protein, putative, expressed
LOC_Os01g46370OsAffx.23684.1.S1_x_at2/111+26710443..26713872lipase class 3 family protein, putative, expressed
LOC_Os01g46370Os.7172.1.S1_at1/111+26710443..26713872lipase class 3 family protein, putative, expressed
LOC_Os01g46380Os.4767.2.S1_x_at11/111+26719024..26723138Ketol-acid reductoisomerase, chloroplast precursor, putative, expressed
LOC_Os01g46380Os.21537.1.S1_x_at3/111+26719024..26723138Ketol-acid reductoisomerase, chloroplast precursor, putative, expressed
LOC_Os01g46390OsAffx.21449.1.S1_at11/111+26725112..26725522hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9524.1.S2_at--997--6571Chr01:26695800..26695824 (25 bp)
GATTCGTTTCAAAGTTGCACCTTGG
LOC_Os01g46350
Os.9524.1.S2_at--178--131Chr01:26695741..26695765 (25 bp)
ATTCATGCGCATCTTAACATCTTAG
LOC_Os01g46350
Os.9524.1.S2_at--803--311Chr01:26695705..26695729 (25 bp)
ATACCTGGTGTACCCTGAAGGCGAA
LOC_Os01g46350
Os.9524.1.S2_at--860--5251Chr01:26695683..26695707 (25 bp)
GAATCGCACTCCTTGAAGCATTAGT
LOC_Os01g46350
Os.9524.1.S2_at--838--1791Chr01:26695641..26695665 (25 bp)
ACCCTTTATGGCCTCAAGTTCAGAA
LOC_Os01g46350
Os.9524.1.S2_at--700--2771Chr01:26695618..26695642 (25 bp)
AAGAGACCCGCTTCAAGTACTTCAT
LOC_Os01g46350
Os.9524.1.S2_at--285--9591Chr01:26695597..26695621 (25 bp)
TCATTGCTAACTTCACCGACTGGAG
LOC_Os01g46350
Os.9524.1.S2_at--674--2571Chr01:26695530..26695554 (25 bp)
AACGTACACGTTTATTCATGCATTT
LOC_Os01g46350
Os.9524.1.S2_at--944--6491Chr01:26695485..26695509 (25 bp)
GATATGCCCAAATTACTTGCCCATG
LOC_Os01g46350
Os.9524.1.S2_at--1141--8111Chr01:26695430..26695454 (25 bp)
GGACTGCTTTCATTTGTTAGCCTCA
LOC_Os01g46350
Os.9524.1.S2_at--839--5651Chr01:26695379..26695403 (25 bp)
GACAGGACAGACCAATCAACTCAGT
LOC_Os01g46350
Target Sequence 
GATTCGTTTCAAAGTTGCACCTTGGAAGAAAATGTAAGCATGAATTCTTTTCAGAAATTATTCATGCGCATCTTAACATC
TTAGCGAGTAAATATATACCTGGTGTACCCTGAAGGCGAATCGCACTCCTTGAAGCATTAGTTCTTCTTCGTCAGGACCA
CCCTTTATGGCCTCAAGTTCAGAAGAGACCCGCTTCAAGTACTTCATTGCTAACTTCACCGACTGGAGTTTGATCTGTAC
ACCAAAGGTTACATTCATGAGTAATCATCAAACGTACACGTTTATTCATGCATTTTATCGATAAAAGAAATCACAGATAT
GCCCAAATTACTTGCCCATGAATCAAATGGACATCATTCAGAGAAAGAGAGGACTGCTTTCATTTGTTAGCCTCAAAAGT
TAGGATATGAAGCGGCCAAACGACAGGACAGACCAATCAACTCAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9524.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis