Browse Element(s) Details


Os.9542.1.A1_at

Description gb:AK103840.1
DB_XREF= gi:32989049
TID=Os.9542.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9542 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033148I08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033148I08, full insert sequence.
FL= gb:AK103840.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2884011/11SET domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g28790Os.50313.1.S1_at11/117+16855498..16860933PAP_fibrillin family protein, expressed
LOC_Os07g28800OsAffx.16458.1.S1_at11/117+16861585..16865428DnaJ domain containing protein
LOC_Os07g28810OsAffx.16459.1.S1_at11/117+16867599..16868610expressed protein
LOC_Os07g28820Os.427.1.S1_at11/117+16868774..16873661Ribonuclease 2-5A family protein, expressed
LOC_Os07g28830NANA7+16873884..16875314hypothetical protein
LOC_Os07g28840Os.9542.1.A1_at11/117+16885207..16888668SET domain containing protein, expressed
LOC_Os07g28850OsAffx.28651.1.S1_x_at11/117+16891936..16898511Piwi domain containing protein, expressed
LOC_Os07g28850Os.7338.1.S1_at11/117+16891936..16898511Piwi domain containing protein, expressed
LOC_Os07g28860OsAffx.28652.1.S1_at11/117+16903895..16904599hypothetical protein
LOC_Os07g28870OsAffx.16460.1.S1_at11/117+16907539..16908369hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9542.1.A1_at--12--6471Chr07:16888093..16888117 (25 bp)
GATAATTTGCTCGTCCTTTTATGCA
LOC_Os07g28840
Os.9542.1.A1_at--830--5431Chr07:16888152..16888176 (25 bp)
GAACCGGTCAATCTTTGAGCAAGAA
LOC_Os07g28840
Os.9542.1.A1_at--1005--3111Chr07:16888175..16888199 (25 bp)
AATTTGCTCCATTCTTCAGATTTCA
LOC_Os07g28840
Os.9542.1.A1_at--94--9831Chr07:16888223..16888247 (25 bp)
TACACAGTAAACTCCCAGTTCGTCT
LOC_Os07g28840
Os.9542.1.A1_at--784--5431Chr07:16888304..16888328 (25 bp)
GAACCCTAACCAAGTGTATTGTGCA
LOC_Os07g28840
Os.9542.1.A1_at--453--3171Chr07:16888519..16888543 (25 bp)
AATTGTCAACACTCGATAGCAGGGC
LOC_Os07g28840
Os.9542.1.A1_at--1016--8371Chr07:16888541..16888565 (25 bp)
GGCGAGGTGCTTTCATAGTTCCATG
LOC_Os07g28840
Os.9542.1.A1_at--914--1231Chr07:16888557..16888581 (25 bp)
AGTTCCATGCATCACACTTTTTGGG
LOC_Os07g28840
Os.9542.1.A1_at--710--2211Chr07:16888601..16888625 (25 bp)
ACAAGCGTTCTGTGGAATGCCTTCT
LOC_Os07g28840
Os.9542.1.A1_at--168--3031Chr07:16888616..16888640 (25 bp)
AATGCCTTCTGTGGAATGCCGCTGA
LOC_Os07g28840
Os.9542.1.A1_at--62--5271Chr07:16888629..16888653 (25 bp)
GAATGCCGCTGAGATACTGATAATT
LOC_Os07g28840
Target Sequence 
GATAATTTGCTCGTCCTTTTATGCAAGCTACAGAACAGCACTAGCTGCATAACAGAAATGAACCGGTCAATCTTTGAGCA
AGAATTTGCTCCATTCTTCAGATTTCATGGCTTCAAGCTGGATTGTTCTATACACAGTAAACTCCCAGTTCGTCTTNTAC
GATCCCTGGAAAGATGGGGATTAGCTGTCCAGTGGAGATGCAACTACAAAAGAACCCTAACCAAGTGTATTGTGCACTGT
AAAAGTTTAGTTCACGAGCTTTCGTTGCAACAAAATCAACAATAGCTCAAAGATTCAAGCTAACTATGTTCTTTAGAATG
CAGAAGTTCTTGATACAACAAAAATCAACAATAGCTCAAAGATTCAAGCTAATTATGTTTTTTTAATGCAGAAGTTCTTG
ATACATTTTTGCTTAACAGCATGTCAAATTGTCAACACTCGATAGCAGGGCGAGGTGCTTTCATAGTTCCATGCATCACA
CTTTTTGGGGTTGCATAGTTTAAGCATAACAAGCGTTCTGTGGAATGCCTTCTGTGGAATGCCGCTGAGATACTGATAAT
T

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9542.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis